Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B18
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0783 + 19607871-19607951,19608027-19608074,19608719-196088...   101   6e-22
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    31   1.2  
08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298...    30   2.8  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    28   8.6  

>04_03_0783 +
           19607871-19607951,19608027-19608074,19608719-19608806,
           19608887-19608930,19609016-19609099
          Length = 114

 Score =  101 bits (243), Expect = 6e-22
 Identities = 53/103 (51%), Positives = 67/103 (65%)
 Frame = +3

Query: 105 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 284
           S    +I  L + Y   TP  LKIID Y+ +   TA+IQ  Y  +VG+FPFNSFLSG +S
Sbjct: 6   SDAKLLIQSLGKAYAA-TPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLS 64

Query: 285 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 413
            +   VL VCLR+QVN +NK EF+ L  ER FADF+  +LVLH
Sbjct: 65  CIGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLH 106


>10_07_0176 - 13826764-13827064,13827271-13827377,13827474-13827836,
            13827912-13828079,13828153-13828374,13828784-13829023,
            13829640-13829719,13829853-13830018,13830720-13830783,
            13830861-13830962,13831085-13831227,13831370-13831474,
            13831551-13831706,13832125-13832241,13832315-13832392,
            13832466-13832550,13833334-13833455,13833546-13833611,
            13835190-13835284,13835427-13835523,13835873-13835983,
            13836083-13836164,13836292-13836353,13836620-13836685,
            13838002-13838232
          Length = 1142

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = +3

Query: 105  SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSF--LSGF 278
            +SL+   PKLYQE    T  K ++I  + F+ F  +++ + +      +   S   + G 
Sbjct: 890  ASLSKKYPKLYQEGIRNTFFKWRVIAVWAFFAFYQSIVFYYFTAAASRYGHGSSGKILGL 949

Query: 279  --ISTV--SCFVLGVCLRL 323
              +ST+  +C V+ V LRL
Sbjct: 950  WDVSTMAFTCVVVTVNLRL 968


>08_01_1077 -
           11027732-11027839,11028346-11028477,11029722-11029802,
           11029911-11030063,11030167-11030281,11030282-11030927,
           11031409-11031613,11031696-11031758
          Length = 500

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 340 FSGLTCSRRHTPRTKQLTVDIKPLKKELNGK 248
           FS L C  RH+P  K+LT+ ++  +++ NG+
Sbjct: 373 FSRLFCLLRHSPELKELTLKLEVERQDHNGE 403


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 298 KQLTVDIKPLKKELNGKVPTRQQ*PNCMTAVRKI*K-RYASIILSFLGVFVVY 143
           K  TV I+ +KKEL G++  +   PNC     KI +  ++ II +F    V++
Sbjct: 384 KNPTVLIEEVKKELEGELSRQHPCPNCRQPNPKIVEDNFSHIICTFHPFAVIW 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,172,551
Number of Sequences: 37544
Number of extensions: 412482
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)