Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B18
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = -2

Query: 398 CKYEICKATFSTQPLELILVFWINL*PKTHSKNKAAYCRYKTT*ERIKWESADKATVAEL 219
           C Y + K+TFS + +E +  F +   P T  +   A  + +T+ E I W + +    + +
Sbjct: 43  CNYHLAKSTFSIRNVEFL--FAVRTLP-TREERITADSKLRTSFETIAWATCESTNASTI 99

Query: 218 YDRSKENIEKVCINYFKLL 162
            D    + E     + +L+
Sbjct: 100 KDEENAHGEDKSFLFIRLI 118


>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 685

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 880 VARSRNXPGAGRSXERETGRGA 815
           +ARSR   GAGR   R  GRGA
Sbjct: 205 LARSRQNGGAGRGFNRTRGRGA 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,354,739
Number of Sequences: 59808
Number of extensions: 474263
Number of successful extensions: 861
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)