Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B18
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35520.1 68415.m04350 defender against cell death 2 (DAD2) id...   108   4e-24
At1g32210.1 68414.m03962 defender against cell death 1 (DAD1) id...   105   4e-23
At2g35520.2 68415.m04351 defender against cell death 2 (DAD2) id...   104   9e-23
At5g57130.1 68418.m07135 expressed protein                             29   3.1  

>At2g35520.1 68415.m04350 defender against cell death 2 (DAD2)
           identical to defender against cell death 2 (DAD-2,
           AtDAD2) [Arabidopsis thaliana] SWISS-PROT:O22622
          Length = 115

 Score =  108 bits (260), Expect = 4e-24
 Identities = 54/94 (57%), Positives = 66/94 (70%)
 Frame = +3

Query: 132 LYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGV 311
           L+  YT  TP  LKIID Y+ +   TA+IQ  Y  LVG+FPFNSFLSG +S +   VL V
Sbjct: 16  LHSAYTA-TPTNLKIIDLYVCFAVFTALIQVAYMALVGSFPFNSFLSGVLSCIGTAVLAV 74

Query: 312 CLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 413
           CLR+QVN ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 75  CLRIQVNKENK-EFKDLAPERAFADFVLCNLVLH 107


>At1g32210.1 68414.m03962 defender against cell death 1 (DAD1)
           identical to defender against cell death 1 (DAD-1,
           AtDAD1) [Arabidopsis thaliana] SWISS-PROT:Q39080
          Length = 115

 Score =  105 bits (252), Expect = 4e-23
 Identities = 51/86 (59%), Positives = 62/86 (72%)
 Frame = +3

Query: 156 TPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNP 335
           TP  LKIID Y+ +   TA+IQ  Y  LVG+FPFNSFLSG +S +   VL VCLR+QVN 
Sbjct: 23  TPTNLKIIDLYVVFAVFTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNK 82

Query: 336 ENKNEFQGLSAERGFADFIFAHLVLH 413
           ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 83  ENK-EFKDLAPERAFADFVLCNLVLH 107


>At2g35520.2 68415.m04351 defender against cell death 2 (DAD2)
           identical to defender against cell death 2 (DAD-2,
           AtDAD2) [Arabidopsis thaliana] SWISS-PROT:O22622
          Length = 116

 Score =  104 bits (249), Expect = 9e-23
 Identities = 54/95 (56%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
 Frame = +3

Query: 132 LYQEYTTKTPKKLKIIDAYLFYIFLTAVIQ-FGYCCLVGTFPFNSFLSGFISTVSCFVLG 308
           L+  YT  TP  LKIID Y+ +   TA+IQ   Y  LVG+FPFNSFLSG +S +   VL 
Sbjct: 16  LHSAYTA-TPTNLKIIDLYVCFAVFTALIQQVAYMALVGSFPFNSFLSGVLSCIGTAVLA 74

Query: 309 VCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 413
           VCLR+QVN ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 75  VCLRIQVNKENK-EFKDLAPERAFADFVLCNLVLH 108


>At5g57130.1 68418.m07135 expressed protein
          Length = 920

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 388 KSAKPRSALNPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKELNGKV 245
           K  KP S L+  N F      CSR+ +  +  L ++IK   +E+ G++
Sbjct: 731 KKRKPESDLSIENGFWMKKEVCSRQSSFNSSYLDLNIKAEDEEVEGEI 778


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,852
Number of Sequences: 28952
Number of extensions: 332201
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)