Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B17
(914 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 221 2e-56
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 188 2e-46
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 148 2e-34
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 134 3e-30
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 130 6e-29
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 117 5e-25
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 103 6e-21
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 101 3e-20
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 97 4e-19
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 97 6e-19
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 97 7e-19
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 95 2e-18
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 92 2e-17
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 91 4e-17
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 85 2e-15
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 82 2e-14
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 81 5e-14
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 67 5e-10
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 65 3e-09
UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic D-r... 36 1.9
UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2; C... 35 2.5
UniRef50_Q6CWX5 Cluster: Similar to sp|Q9C2M3 Neurospora crassa ... 34 5.8
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 221 bits (541), Expect = 2e-56
Identities = 103/114 (90%), Positives = 111/114 (97%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFR
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFR 114
Score = 79.8 bits (188), Expect = 9e-14
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1
Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
K K A LIL+ESRIHRLARYYKTK VLPPNWKYESSTASALVA
Sbjct: 107 KDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 188 bits (457), Expect = 2e-46
Identities = 88/114 (77%), Positives = 99/114 (86%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
MGRMH+ GKGIS SALPY+RS P+WLK T DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFR
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFR 114
Score = 65.7 bits (153), Expect = 2e-09
Identities = 32/45 (71%), Positives = 34/45 (75%)
Frame = +1
Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
K K + LILVESRIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 107 KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 148 bits (358), Expect = 2e-34
Identities = 66/114 (57%), Positives = 90/114 (78%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
M RMH G+G + SALPYRR+ P WLK+ + +V + + K +KG+ PSQIG+ LRDS G+
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGI 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
AQV+ VTG+KILRI+K GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+R
Sbjct: 61 AQVKNVTGRKILRILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYR 114
Score = 66.5 bits (155), Expect = 9e-10
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = +1
Query: 472 LILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
LILVESRIHRLARYYK LPP WKYESSTASA+VA
Sbjct: 115 LILVESRIHRLARYYKRVKQLPPTWKYESSTASAMVA 151
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 134 bits (324), Expect = 3e-30
Identities = 72/113 (63%), Positives = 80/113 (70%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
MG MHAP K +SQS LPY SV WLK T+DD+KEQIYKL KKGLTPSQIGV LRD+H
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSVLMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTH-- 58
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKF 467
GLA DLP DLY+LIKKAVA++KHLERNRKDKD+KF
Sbjct: 59 ------------------GLALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKF 93
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/45 (68%), Positives = 34/45 (75%)
Frame = +1
Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
K K A L L ESRIH LARY KTK +LPP+WKYES +ASALVA
Sbjct: 87 KDKDAKFCLSLTESRIHPLARYCKTKRMLPPSWKYESPSASALVA 131
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 130 bits (313), Expect = 6e-29
Identities = 57/106 (53%), Positives = 80/106 (75%)
Frame = +3
Query: 153 KGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 332
KGI+ S +P+ R+ P W+K + + + E I L KKGL PSQIG LRDS G+ V+ + G
Sbjct: 6 KGIASSLIPFERNAPLWVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAG 65
Query: 333 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
+ I++I+K GL P++PEDL++LIKKA+ ++KHLERN+KDKDSKFR
Sbjct: 66 RNIVKILKKNGLNPEIPEDLFFLIKKAINIKKHLERNKKDKDSKFR 111
Score = 46.4 bits (105), Expect = 0.001
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESS 561
K K + LIL ES+IHRL+RYYK +P NW+++SS
Sbjct: 104 KDKDSKFRLILTESKIHRLSRYYKRIQRIPINWRFDSS 141
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 117 bits (281), Expect = 5e-25
Identities = 54/112 (48%), Positives = 79/112 (70%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
M RMHA +G S S P R+ VP W++ T + V++ + +L KKG +QIG++LRD++G+
Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGI 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 464
V+ +TGKKI +IMK GL P +PEDL L+++AV +RKHLE++ KD SK
Sbjct: 61 PDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSK 112
Score = 49.6 bits (113), Expect = 1e-04
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +1
Query: 469 GLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV 579
GL L+ES+I RL +YYK+K VLP +W+Y TA LV
Sbjct: 114 GLQLIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 150
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 103 bits (247), Expect = 6e-21
Identities = 50/112 (44%), Positives = 76/112 (67%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
M R+HA +G S S YR S P W+ ++ ++V++++ +L +G PS IG++LRD +G+
Sbjct: 1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGI 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 464
V+ VTGKKI +I+K G+ PEDL LIKKA+ +R HLE +RKDK ++
Sbjct: 61 PSVKQVTGKKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNR 112
Score = 43.6 bits (98), Expect = 0.007
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +1
Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKY 552
K K GL L+E++I RL+ YYK K VLP +WKY
Sbjct: 107 KDKHNRRGLQLIEAKIWRLSSYYKEKGVLPADWKY 141
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 101 bits (242), Expect = 3e-20
Identities = 44/114 (38%), Positives = 67/114 (58%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
M +MH+ GKG S S PY + PTWL + D++K + ++G KG+ IG LRD +G+
Sbjct: 1 MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGI 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
+ V G+ I R ++ G+ P +P DL L+ +A +R HL RKD +K+R
Sbjct: 61 GKASDVLGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYR 114
Score = 43.2 bits (97), Expect = 0.010
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1
Query: 436 NATGKTKTANSGLILVESRIHRLARYYKTKSVLPPNWK 549
N K +A LILV SR++R+ARYYK K +P NWK
Sbjct: 103 NIYRKDNSAKYRLILVSSRMYRVARYYKRKMRIPGNWK 140
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 97.5 bits (232), Expect = 4e-19
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 7/118 (5%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
M RMHA +G S S P R + P WL+ T +D++ + KL K+G + + IG +LRD +G+
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 309 AQVRFV-----TGKK--ILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 461
V+ +K I RI++ GLAP++PEDL +LIK+AV +RKHLE++ KD S
Sbjct: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHS 118
Score = 45.6 bits (103), Expect = 0.002
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 469 GLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV 579
GL L+ES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 97.1 bits (231), Expect = 6e-19
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 120 AANMGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 296
AA GR+H PGKG+S+SAL Y SVPTWLKLT+D+VKEQIYKL KKGLTP QIGV+LRD
Sbjct: 211 AAITGRIHVPGKGLSRSALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 96.7 bits (230), Expect = 7e-19
Identities = 45/109 (41%), Positives = 68/109 (62%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
MGR+H+ G S S P P+W++ +V++ I K K+GL PSQIG LRD H +
Sbjct: 1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAI 59
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 455
R +TGK + +IM+ G P+LPEDL +++KAV +++HL N+ D+
Sbjct: 60 PLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDR 108
Score = 37.1 bits (82), Expect = 0.62
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 472 LILVESRIHRLARYYKTKSVLPPNWKYESSTA 567
L L+E+++HRL YYK +P +WKY+S A
Sbjct: 114 LELIEAKVHRLDVYYKRIGRIPKDWKYKSVVA 145
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 95.5 bits (227), Expect = 2e-18
Identities = 43/109 (39%), Positives = 67/109 (61%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
MGRMH G S S P P+W+ + +++E + K K GLTPSQIG+ LRD H +
Sbjct: 1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSI 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 455
++ +T K I I++ L ++PEDL ++KKAV +++HL+ N+ D+
Sbjct: 61 PLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDR 109
Score = 37.9 bits (84), Expect = 0.36
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 472 LILVESRIHRLARYYKTKSVLPPNWKYESSTA 567
L L+E+++HRL+ YYK +P WKY+S A
Sbjct: 115 LELIEAKVHRLSVYYKKIGRIPATWKYKSVVA 146
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 91.9 bits (218), Expect = 2e-17
Identities = 46/114 (40%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKG-LTPSQIGVMLRDSHG 305
MG+M++ GKGIS + +PYR+ W LT+ ++ + I L K L PS+IG++LRD
Sbjct: 1 MGKMYSKGKGISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKL 60
Query: 306 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKF 467
V R ++G I +I++ GL P +PEDL+YLIKKA ++ HL + D +++
Sbjct: 61 VVDTRNISGMNISKILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRY 114
Score = 39.9 bits (89), Expect = 0.089
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 472 LILVESRIHRLARYYKTKSVLPPNWKYESS 561
L L+ES I+RL+RYYK LP NWKY S+
Sbjct: 116 LNLIESHIYRLSRYYKRIFRLPKNWKYISN 145
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 91.1 bits (216), Expect = 4e-17
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Frame = +3
Query: 129 MGRMHAPGK--GISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 302
M R+HA + G S S P R + P W + V+ +I +L K+G +P+ IG++LRD +
Sbjct: 1 MSRLHAHKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQY 60
Query: 303 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 464
G+ VR GK + ++ GL PD+P DL YL+K+A + KH+E N +D +K
Sbjct: 61 GIPDVRLYIGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAK 114
Score = 44.0 bits (99), Expect = 0.005
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 478 LVESRIHRLARYYKTKSVLPPNWKYESSTA 567
L+ S+IHRLA+YYK K VLP +WKY A
Sbjct: 119 LIISKIHRLAKYYKRKGVLPKDWKYSIEIA 148
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 85.4 bits (202), Expect = 2e-15
Identities = 43/115 (37%), Positives = 67/115 (58%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
M RMH +G S S R P+W++ + D++KE I K+ K+G+T S IG+ LRD + +
Sbjct: 1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAI 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRA 473
R V K+ +++K L D+PEDL LI++ KHL N+ D ++K +A
Sbjct: 61 PGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKA 115
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 81.8 bits (193), Expect = 2e-14
Identities = 41/112 (36%), Positives = 64/112 (57%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
M RM+A +G S S+ P+ P W A +++ I + K G++ +QIG +LRD H V
Sbjct: 1 MARMYASKRGKSGSSKPFMTEAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAV 60
Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 464
VR V GK+I ++ + PEDL L+++AVA+ +HL N +D +K
Sbjct: 61 PNVRLVLGKRIGAVLSENDESGTYPEDLMNLMRQAVAIIEHLTTNSRDLHNK 112
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 80.6 bits (190), Expect = 5e-14
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Frame = +3
Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDS--H 302
M RMH +G S S P P W + D ++ ++ +L ++G +PS+IG+ LRD
Sbjct: 1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQ 60
Query: 303 G--VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 464
G + V TGKK+ I++ PDLPEDL L+++AV +R H++ N D +K
Sbjct: 61 GTPIPDVSLATGKKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNK 116
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 67.3 bits (157), Expect = 5e-10
Identities = 29/35 (82%), Positives = 34/35 (97%)
Frame = +3
Query: 366 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFR
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFR 103
Score = 47.6 bits (108), Expect = 4e-04
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +1
Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWK 549
K K + LI+VESRIHRLARYYK LPP WK
Sbjct: 96 KDKDSKFRLIVVESRIHRLARYYKRTKKLPPVWK 129
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 64.9 bits (151), Expect = 3e-09
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3
Query: 120 AANMGRMHAPGKGISQSALPYRRSVPTWLKLTADDVK 230
+A +GRMHAPGKG+SQSALPYRRSV WLKL +DDVK
Sbjct: 441 SAIVGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic
D-ribose-binding protein; n=4; Rhizobiales|Rep: Ribose
ABC transporter, periplasmic D-ribose-binding protein -
Brucella suis
Length = 355
Score = 35.5 bits (78), Expect = 1.9
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 189 SVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 320
+VPTW+K T D + +++ +L K+GL +M+ D+ G AQ +
Sbjct: 57 AVPTWMKQTEDTIVDEVAQLKKEGLVKD---LMITDAQGNAQTQ 97
>UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2;
Cryptosporidium|Rep: 3CCCH domain containing protein -
Cryptosporidium parvum Iowa II
Length = 591
Score = 35.1 bits (77), Expect = 2.5
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +3
Query: 198 TWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPD 377
T L++T D K + + K G+ GV+ R +HG A++R T K +LR K L P
Sbjct: 154 TELRVTNDFYKTSVCRYWKMGVK-CDAGVLCRHAHGEAELRKKTNKHLLR-RKDDQLPPS 211
Query: 378 LPED 389
+ ED
Sbjct: 212 IRED 215
>UniRef50_Q6CWX5 Cluster: Similar to sp|Q9C2M3 Neurospora crassa
Related to kinesin-like protein KIF1C; n=1;
Kluyveromyces lactis|Rep: Similar to sp|Q9C2M3
Neurospora crassa Related to kinesin-like protein KIF1C
- Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 456
Score = 33.9 bits (74), Expect = 5.8
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = +3
Query: 162 SQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 341
S+ +PYR S+ TW+ +KE + K + + L +S ++ +R+ T K
Sbjct: 258 SKHLIPYRDSLLTWV------LKENLGGNSKTCMIACISPIDLEES--LSTLRYATTAKE 309
Query: 342 LRIMKAMG-LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 461
+++ M + P++ ED+ ++ A + RK LE + + S
Sbjct: 310 IKLRATMNEIVPNINEDMKAAVEAAASSRKELEMLKSEMSS 350
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,746,344
Number of Sequences: 1657284
Number of extensions: 10837268
Number of successful extensions: 29018
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 28079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29005
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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