Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B17
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   183   4e-47
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   2.1  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   3.7  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   6.5  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  183 bits (445), Expect = 4e-47
 Identities = 85/114 (74%), Positives = 97/114 (85%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
            QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFR
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFR 114



 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 31/45 (68%), Positives = 35/45 (77%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K +   LIL+ESRIHRLARYY+    LPP WKYES+TASALVA
Sbjct: 107 KDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESATASALVA 151


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 203  PGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNRRSDNDNKRNQKDGCRKTN 51
            P R  +A+R+ +       +V  T    F L    D+DN   QKD   KT+
Sbjct: 1352 PSRQNSALRREQSVRAPPSNVAVTSANSFELLEEHDHDNDGGQKDSNSKTS 1402


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 213 TADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 386
           ++DD   Q  +     L   QIG+ L D  G A V   T     +      L  D+  PE
Sbjct: 66  SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121

Query: 387 DLYYLIKKAVAMRKHLE 437
            +  L K  +  +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -1

Query: 260 TLLSKFVNLFLYIVGSQFQPGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNR 105
           TL+SK    FL+    Q Q      AV QR   D L  SV +  V   +LNR
Sbjct: 145 TLVSKVHPNFLFDSDVQSQHITRDEAVNQRLQDDPLVSSVGSLQVFSDMLNR 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,201
Number of Sequences: 5004
Number of extensions: 45196
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)