Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B17
         (914 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)        161   7e-40
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               29   5.2  
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  28   9.2  
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
          Length = 135

 Score =  161 bits (391), Expect = 7e-40
 Identities = 75/90 (83%), Positives = 84/90 (93%)
 Frame = +3

Query: 201 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 380
           W KLT+DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KILRI+KA GLAP L
Sbjct: 20  WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILRILKAKGLAPSL 79

Query: 381 PEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
           PEDLY LIKKAVA+RKHLE+NRKDKDSKFR
Sbjct: 80  PEDLYCLIKKAVAVRKHLEKNRKDKDSKFR 109



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 25/34 (73%), Positives = 28/34 (82%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWK 549
           K K +   LIL+ESRIHRLARY+KTK VLPPNWK
Sbjct: 102 KDKDSKFRLILIESRIHRLARYFKTKRVLPPNWK 135


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 354 KAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRAYFSRVQD 494
           +A G+APD P +L  LIK+ + + +        + +K +A  ++ +D
Sbjct: 124 RASGIAPDEPSELDQLIKQIIELEETTVPEDSQRQAKEKANKAKAED 170


>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -3

Query: 237 FVPLHRRQSIS-TR*GHCGGKA-APTGR-YPYQERAYDPCLRLFTKSPI*QRQQEKPKRW 67
           F PL    S S +R    GG A +PT R YP  +RAY P  + + K+      + KP++ 
Sbjct: 36  FSPLASSTSASDSRHRPVGGPAYSPTERAYPITDRAYSPTGQPYPKTDRQPVDEHKPQQP 95

Query: 66  LPEDKLVKS 40
            P ++ V S
Sbjct: 96  EPTNRPVPS 104


>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 282 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 410
           V L D HG + +   + + + RI++AM      PED   L KK
Sbjct: 211 VTLVDDHGYSAMDVTSSQSVRRILRAMPGLFQKPEDQLQLTKK 253


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 365 THCLHDTEDLFASYESYLGNSM*IPQHYTNL*G-SETLLSKFVNLF 231
           T+    T  L A+Y +    +  +P +YTNL   + T L+ + NLF
Sbjct: 160 TNLFAPTHSLLANYTNLFAPTHSLPANYTNLFAPTHTTLANYTNLF 205


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 159 ISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVM--LRDSHGVAQVRFVTG 332
           +S   LP +RS+  + +L +D    ++    K       + V+  + D  G A    + G
Sbjct: 745 LSHDDLPAQRSLGVYWELRSDSFAYRVSPPDKPFTRRGVLSVVNSVYDPLGHAAPVMLQG 804

Query: 333 KKILRIMKAMGLAPD 377
           KKIL+ + AMG  P+
Sbjct: 805 KKILQRLVAMGKKPE 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,737
Number of Sequences: 59808
Number of extensions: 357504
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)