Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B17
         (914 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91854-1|CAA62965.1|  151|Drosophila melanogaster ribosomal prot...   211   9e-55
X91853-1|CAA62964.1|  151|Drosophila melanogaster ribosomal prot...   211   9e-55
AY058536-1|AAL13765.1|  151|Drosophila melanogaster LD23958p pro...   211   9e-55
AE014134-1471|ABC65883.1|  151|Drosophila melanogaster CG13389-P...   211   9e-55
AE014134-1470|AAF52649.1|  151|Drosophila melanogaster CG13389-P...   211   9e-55
Z19052-1|CAA79496.1|  151|Drosophila melanogaster ribosomal prot...   197   2e-50
AY051934-1|AAK93358.1|  385|Drosophila melanogaster LD41491p pro...    29   8.9  
AE014296-2487|AAF49658.1|  385|Drosophila melanogaster CG6859-PA...    29   8.9  

>X91854-1|CAA62965.1|  151|Drosophila melanogaster ribosomal protein
           S13 protein.
          Length = 151

 Score =  211 bits (516), Expect = 9e-55
 Identities = 97/114 (85%), Positives = 108/114 (94%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFR
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFR 114



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 39/45 (86%), Positives = 39/45 (86%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K     LILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 107 KDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>X91853-1|CAA62964.1|  151|Drosophila melanogaster ribosomal protein
           S13 protein.
          Length = 151

 Score =  211 bits (516), Expect = 9e-55
 Identities = 97/114 (85%), Positives = 108/114 (94%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFR
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFR 114



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 39/45 (86%), Positives = 39/45 (86%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K     LILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 107 KDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AY058536-1|AAL13765.1|  151|Drosophila melanogaster LD23958p
           protein.
          Length = 151

 Score =  211 bits (516), Expect = 9e-55
 Identities = 97/114 (85%), Positives = 108/114 (94%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFR
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFR 114



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 39/45 (86%), Positives = 39/45 (86%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K     LILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 107 KDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AE014134-1471|ABC65883.1|  151|Drosophila melanogaster CG13389-PB,
           isoform B protein.
          Length = 151

 Score =  211 bits (516), Expect = 9e-55
 Identities = 97/114 (85%), Positives = 108/114 (94%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFR
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFR 114



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 39/45 (86%), Positives = 39/45 (86%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K     LILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 107 KDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AE014134-1470|AAF52649.1|  151|Drosophila melanogaster CG13389-PA,
           isoform A protein.
          Length = 151

 Score =  211 bits (516), Expect = 9e-55
 Identities = 97/114 (85%), Positives = 108/114 (94%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFR
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFR 114



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 39/45 (86%), Positives = 39/45 (86%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K     LILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 107 KDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>Z19052-1|CAA79496.1|  151|Drosophila melanogaster ribosomal protein
           S17 protein.
          Length = 151

 Score =  197 bits (481), Expect = 2e-50
 Identities = 91/114 (79%), Positives = 103/114 (90%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI K G++G    QIG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKAGQEGSDSLQIGIILRDSHGV 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFR
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFR 114



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 39/45 (86%), Positives = 39/45 (86%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K     LILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 107 KDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AY051934-1|AAK93358.1|  385|Drosophila melanogaster LD41491p
           protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 28/111 (25%), Positives = 51/111 (45%)
 Frame = +3

Query: 186 RSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMG 365
           R + T  K   D++K+Q   L +  +T S I    RD     + + +   K + + + + 
Sbjct: 142 RDIMTEQKQVTDELKQQYLSLIRHFITDSGI----RDLARYIRTQVIAVTKTIPLSEQLS 197

Query: 366 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRAYFSRVQDSQTGPLLQ 518
           L+ DL E L++ ++ A+         R+D +S+   Y    Q+    PLLQ
Sbjct: 198 LS-DL-EQLFWSLQMAINAD-----TRRDPNSRMSKYLLPSQNPSHSPLLQ 241


>AE014296-2487|AAF49658.1|  385|Drosophila melanogaster CG6859-PA
           protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 28/111 (25%), Positives = 51/111 (45%)
 Frame = +3

Query: 186 RSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMG 365
           R + T  K   D++K+Q   L +  +T S I    RD     + + +   K + + + + 
Sbjct: 142 RDIMTEQKQVTDELKQQYLSLIRHFITDSGI----RDLARYIRTQVIAVTKTIPLSEQLS 197

Query: 366 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRAYFSRVQDSQTGPLLQ 518
           L+ DL E L++ ++ A+         R+D +S+   Y    Q+    PLLQ
Sbjct: 198 LS-DL-EQLFWSLQMAINAD-----TRRDPNSRMSKYLLPSQNPSHSPLLQ 241


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,519,778
Number of Sequences: 53049
Number of extensions: 510060
Number of successful extensions: 1204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4484945457
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)