Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B17
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   181   7e-46
Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  181 bits (440), Expect = 7e-46
 Identities = 80/114 (70%), Positives = 102/114 (89%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
            QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+R
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYR 114



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +1

Query: 472 LILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           LILVESRIHRLARYYKTK  LPP WKYES TA++LV+
Sbjct: 115 LILVESRIHRLARYYKTKRQLPPTWKYESGTAASLVS 151


>Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical
           protein F38C2.6 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 158 YLPVGAALPPQ-CP-YLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKI 322
           YL V A LP   CP +  E D +R      QTWK G+   T  C A    +S P  I
Sbjct: 93  YLAVKADLPNNTCPAFPFETDIKR---PGNQTWKSGNGWTTRLCKAGWTLFSRPDSI 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,740
Number of Sequences: 27780
Number of extensions: 256869
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)