Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B17
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 424 GNTWNATGKTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESST 564
           GNT ++   +  A   + +    I+ +A +   +++ P  WK   ST
Sbjct: 545 GNTNSSARDSSPAIESISVDSGSINTVAEWEPPRALWPTEWKVRPST 591


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 FVNLFLYIVGSQFQPGR 195
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 FVNLFLYIVGSQFQPGR 195
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 FVNLFLYIVGSQFQPGR 195
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 438 RNRKDKDSKFRAYFSRVQDSQTG 506
           RN K+   +FR    +  DS+TG
Sbjct: 481 RNNKEDSEEFRQRLRKELDSKTG 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,160
Number of Sequences: 438
Number of extensions: 2954
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)