Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B17
         (914 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   188   3e-48
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   188   6e-48
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    31   1.4  
At1g65720.1 68414.m07459 expressed protein                             29   3.2  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   9.9  
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    28   9.9  
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    28   9.9  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  188 bits (459), Expect = 3e-48
 Identities = 88/114 (77%), Positives = 100/114 (87%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFR
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFR 114



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 32/45 (71%), Positives = 34/45 (75%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K +   LILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct: 107 KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  188 bits (457), Expect = 6e-48
 Identities = 88/114 (77%), Positives = 99/114 (86%)
 Frame = +3

Query: 129 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 308
           MGRMH+ GKGIS SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 309 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFR 470
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFR
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFR 114



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 32/45 (71%), Positives = 34/45 (75%)
 Frame = +1

Query: 448 KTKTANSGLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 582
           K K +   LILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct: 107 KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 165 GRYPYQERAYDPCLRLFT 112
           GRYP+  RAYDPC   ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317


>At1g65720.1 68414.m07459 expressed protein
          Length = 180

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 337 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRR 182
           FL +T +T A PC++  I+     + P  P+L    FTS+   F  V T+RR
Sbjct: 16  FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 215 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 331
           C  C  TN   W+ G       CNA G  W     + N+
Sbjct: 7   CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 376 SGARPIAFMIRRIFLPVTNLTWATPCESLSITP 278
           +  R I +++RR+ LP+ N  +  PC  L+  P
Sbjct: 212 ASGRQITWLLRRLTLPIRNALFEEPCLFLNSHP 244


>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 209 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 295
           + C  C+ T    W+EG +     CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,216,254
Number of Sequences: 28952
Number of extensions: 242058
Number of successful extensions: 700
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)