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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B16
         (931 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.082
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)                      31   1.8  
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)                 30   2.3  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   9.4  

>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 35.1 bits (77), Expect = 0.082
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = -2

Query: 843 LGGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           LGG   TG  G   G GG     GGG TG      G  G   GG G
Sbjct: 241 LGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGG 286



 Score = 31.9 bits (69), Expect = 0.76
 Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXX-PKXGKXGXFPGGVG 706
           GG   TG  G   G GG     GGG TG       G  G   GGVG
Sbjct: 284 GGGGATGGGGGATGGGGGATGGGGGATGVGGGATGGGGGATGGGVG 329


>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
          Length = 186

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 19/45 (42%), Positives = 19/45 (42%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           GG   TG  G   G GG     GGG TG      G  G   GGVG
Sbjct: 85  GGGGATGDGGGATGGGGGATGGGGGATG------GHGGATGGGVG 123


>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
          Length = 765

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVGXXSLXXGEN 679
           GG    G  G   G GG G   GGG  G      G  G   GG G      G++
Sbjct: 659 GGDGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGAGAGDD 712


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 706 PNPPGEXPXFAXFGXPXSG-FPPPXXLPXPP 795
           PNPP   P  A +  P +  +PPP   P PP
Sbjct: 112 PNPPYPPPPNAPYPPPPNPPYPPPPNAPYPP 142



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 706 PNPPGEXPXFAXFGXPXSGFPPPXXLPXPP 795
           PNPP   P +  +  P   +PPP   P PP
Sbjct: 90  PNPPYPPPPYPPY-PPPPPYPPPPNPPYPP 118



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 706 PNPPGEXPXFAXFGX-PXSGFPPPXXLPXPP 795
           PNPP   P  A +   P + +PPP   P PP
Sbjct: 128 PNPPYPPPPNAPYPPSPNAPYPPPPNPPYPP 158


>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 98  TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 202
           T+  GIT    T Y +S +K+V +   T+ A  TC
Sbjct: 19  TRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 140 GASLRKMVKKMEVTQHAKYTCSFCGK 217
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,894,527
Number of Sequences: 59808
Number of extensions: 381545
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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