Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B16
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   146   1e-35
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    31   1.6  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    30   2.7  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    30   2.7  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    30   2.7  
U61288-1|AAB17543.1|  790|Caenorhabditis elegans CE protein.           29   6.3  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  146 bits (355), Expect = 1e-35
 Identities = 62/90 (68%), Positives = 76/90 (84%)
 Frame = +2

Query: 86  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 265
           MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR   GIW+C +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 266 KRTVAGGAWVFSTTAASSCRSAVRRLREVK 355
            + VAGGA+V+ T  A++ RS +RRLR++K
Sbjct: 61  HKVVAGGAYVYGTVTAATVRSTIRRLRDLK 90


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
           protein R08B4.1b protein.
          Length = 1160

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           GG   +G  G+    GG G   GGG  G      G  G   GG G
Sbjct: 806 GGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAG 850


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXX--GGGETGXXXPKXGKXGXFPGGVGXXSLXXG 685
           GG F  G  G   G GG G     GGG  G      G  G  PGG G      G
Sbjct: 102 GGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGG 155



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -2

Query: 837 GXFKTGXXGNXKGPGGXGEXX-GGGETGXXXPKXGKXGXF-PGG 712
           G +  G  G   G GG G    GGG  G   P  G  G + PGG
Sbjct: 194 GGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGG 237


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           GG  + G  G   GPGG G+   GG+ G    + G  G   GG G
Sbjct: 230 GGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGG--QGGWG 272


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           GG  + G  G   GPGG G+   GG+ G    + G  G   GG G
Sbjct: 192 GGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGG--QGGWG 234


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           GG  + G  G   GPGG G+   GG+ G    + G  G   GG G
Sbjct: 230 GGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGG--QGGWG 272


>U61288-1|AAB17543.1|  790|Caenorhabditis elegans CE protein.
          Length = 790

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = -2

Query: 837 GXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           G   +G  G+    GG G   GGG  G      G  G   GG G
Sbjct: 437 GSSGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAG 480


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 182 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 265
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,685
Number of Sequences: 27780
Number of extensions: 303037
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)