Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B16
         (931 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         133   2e-31
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   126   2e-29
At2g30560.1 68415.m03722 glycine-rich protein                          35   0.067
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi...    31   1.4  
At4g01985.1 68417.m00265 expressed protein                             29   4.4  
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    28   7.7  
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    28   7.7  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    28   7.7  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  133 bits (321), Expect = 2e-31
 Identities = 58/88 (65%), Positives = 69/88 (78%)
 Frame = +2

Query: 86  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 265
           MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 266 KRTVAGGAWVFSTTAASSCRSAVRRLRE 349
            +  AGGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  126 bits (304), Expect = 2e-29
 Identities = 56/88 (63%), Positives = 66/88 (75%)
 Frame = +2

Query: 86  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 265
           M KRTKK  I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR  VGIW CK C
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 266 KRTVAGGAWVFSTTAASSCRSAVRRLRE 349
            +  AGGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At2g30560.1 68415.m03722 glycine-rich protein 
          Length = 171

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 19/45 (42%), Positives = 20/45 (44%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           G   K+G  G   G GG G   GGG  G    K GK G   GG G
Sbjct: 94  GAGGKSGCGGGKSGGGGGGGKNGGGCGGGGGGKGGKSGGGSGGGG 138


>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
           protein similar to Hsc70-interacting protein (Hip) from
           {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
           contains Pfam profile PF00515: tetratricopeptide repeat
           (TPR) domain
          Length = 441

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKG--PGGXGEXXGG---GETGXXXPKXGKXGXFPGGVG 706
           GG F  G  G   G  PGG     GG   G  G      G  G FPGG+G
Sbjct: 290 GGGFPGGMPGGFPGGMPGGFPGGMGGMPGGFPGGMGGMGGMPGGFPGGMG 339


>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = -2

Query: 840 GGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           GG    G  G   G    G   GGG  G      G  G   GGVG
Sbjct: 215 GGGGTVGAGGRGSGGASGGVGVGGGAGGSGGGSVGGGGRGSGGVG 259



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -2

Query: 843 LGGXFKTGXXGNXKGPGGXGEXXGGGETGXXXPKXGKXGXFPGGVG 706
           +GG       G  +G GG      GG +G      G  G   GGVG
Sbjct: 302 VGGGGGGSVGGGGRGSGGASGGASGGASGGAGGSVGAGGGVGGGVG 347


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 797 RGGXGXSXGGGKPEXGXPXXAKXGFSPGGLG 705
           RGG G S GGG+ E G       G   GG G
Sbjct: 124 RGGGGGSYGGGRREGGGGYGGGEGGGYGGSG 154


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 797 RGGXGXSXGGGKPEXGXPXXAKXGFSPGGLG 705
           RGG G S GGG+ E G       G   GG G
Sbjct: 141 RGGGGGSYGGGRREGGGGYGGGEGGGYGGSG 171


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 706 PNPPGEXPXFAXFGXPXSGFPPPXXLPXPP 795
           P PP   P F   G      PPP   P PP
Sbjct: 619 PPPPPPPPSFGSTGNKRQAQPPPPPPPPPP 648


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,368,578
Number of Sequences: 28952
Number of extensions: 279880
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)