Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B15
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    30   0.36 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.84 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   4.5  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   5.9  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   7.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   8.6  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 320 TASGMSFLKSPETASQGDVSKKHPIKAFRESI 225
           ++ G+ FL SPE A+Q  +S+KH   A  +S+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 151 FAAVYCKETYSSENDDLDIEALVGNID-SLKAFIGCFLETSPCDAVSGDFKKDIPEAVAE 327
           F   + +  Y ++ND       + +ID S+K+F  C  E +   +  GD  +D   A  +
Sbjct: 29  FVEKFAESLYETQNDG---SKKLSSIDGSIKSFAACLHELNRLKSRVGDRIRDYASASKQ 85

Query: 328 ACGKCTPAQKHLFKRFLEVVK 390
              +      HL ++F +V++
Sbjct: 86  VQNEYHQKSNHLREKFAQVLE 106


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +1

Query: 280 AVSGDFKKDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYXAFKTKYXP 438
           A S  FK DI E + ++      A  HL+ R  E ++ KLP+E   F  K+ P
Sbjct: 106 AYSVVFKDDISEEMLKS------ALNHLYDRMTEALRFKLPEEDEVF-DKHEP 151


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 151 FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 261
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 115 KMKGFYVLCFALFAAVYCKETYS 183
           ++ G ++LC  L A V CKE +S
Sbjct: 580 RLSGHFLLCAKLGAKVRCKELFS 602


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 567 PVLXXPXPPXPPPXXPXQVPGP 632
           P++  P PP PPP      P P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPP 777


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 8.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 558 NLXPVLXXPXPPXPPP 605
           +L  ++  P PP PPP
Sbjct: 897 SLPTIITHPTPPPPPP 912



 Score = 21.0 bits (42), Expect(2) = 8.6
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +3

Query: 582  PXPPXPPPXXPXQVPGPRILP 644
            P PP PPP       G  + P
Sbjct: 945  PPPPPPPPPLVSAAGGKFVSP 965


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,933
Number of Sequences: 5004
Number of extensions: 59548
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)