Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B15
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  30   2.7  
SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  30   2.7  
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)                     29   4.8  
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)                      29   4.8  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   6.3  
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)            28   8.4  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 276

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 549 P*LNLXPVLXXPXPPXPPPXXPXQVPGPRIL 641
           P + + P L  P PP PPP  P    G  IL
Sbjct: 59  PTVPIPPTLPPPPPPPPPPLPPPPPSGGNIL 89


>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 500

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 549 P*LNLXPVLXXPXPPXPPPXXPXQVPGPRIL 641
           P + + P L  P PP PPP  P    G  IL
Sbjct: 283 PTVPIPPTLPPPPPPPPPPLPPPPPSGGNIL 313


>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
          Length = 264

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 567 PVLXXPXPPXPPPXXPXQVPGPR 635
           P L  P PP PPP  P   PG +
Sbjct: 74  PPLCAPPPPPPPPPPPPPPPGAK 96


>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
          Length = 465

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 567 PVLXXPXPPXPPPXXPXQVPGPR 635
           P L  P PP PPP  P   PG +
Sbjct: 275 PPLCAPPPPPPPPPPPPPPPGAK 297


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 567  PVLXXPXPPXPPPXXPXQVPGP 632
            PV   P PP PPP  P   PGP
Sbjct: 1655 PVFHYPAPPPPPPPAPGP-PGP 1675


>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
          Length = 444

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 314 SGMSFLKSP---ETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSL 168
           +G+ ++KS     T +Q D+  K+P +  R  ++PT++    S    + VSL
Sbjct: 346 AGLVYMKSGFMNRTVTQADLYNKYPDRPVRLKVYPTQSPAISSDVGGVNVSL 397


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 567 PVLXXPXPPXPPPXXPXQVPGPRI 638
           P+   P PP PPP  P Q   P +
Sbjct: 913 PLAPEPPPPLPPPPPPIQTTRPTV 936


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 274 CDAVSGDFKKDIPEAVAEACGKC 342
           CDAV+G   K +P    E C KC
Sbjct: 642 CDAVTGKCYKCLPNVTGEHCEKC 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,361,508
Number of Sequences: 59808
Number of extensions: 453447
Number of successful extensions: 1547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)