Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B14
         (1481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.13 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   2.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 143 PPPPPXPPXGAXSGXXXPPXP 205
           PPPPP PP  A +G   PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 143 PPPPPXPPXGAXSGXXXPPXPXG 211
           PPPPP PP         PP P G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
 Frame = +1

Query: 367 PPXXXPXXPXXXPPTXX--SXXXPXXXPXLRVXXXHTXKXPXXPPXAKXYXSPPPPPXP 537
           PP   P  P   PP+    +   P   P   +        P  PP      +PPP P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +2

Query: 77  PPTKXKNXEPRXXWXSXXXXTXPPPPPXPPXGAXSGXXXPP 199
           PP   +N             + PPPPP P   A      PP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect(2) = 2.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 143 PPPPPXPPXGAXSG 184
           PPPPP PP  + +G
Sbjct: 946 PPPPPPPPLVSAAG 959



 Score = 23.8 bits (49), Expect(2) = 4.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 143  PPPPPXPPXGAXSGXXXPP 199
            PPPPP P   A  G    P
Sbjct: 947  PPPPPPPLVSAAGGKFVSP 965



 Score = 22.2 bits (45), Expect(2) = 2.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 137 TXPPPPPXP 163
           T PPPPP P
Sbjct: 906 TPPPPPPLP 914



 Score = 21.8 bits (44), Expect(2) = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 137 TXPPPPPXPP 166
           T P PPP PP
Sbjct: 903 THPTPPPPPP 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,235
Number of Sequences: 5004
Number of extensions: 13511
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 826566558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)