Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B13
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             292   3e-79
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.65 
SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         30   2.6  
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)                    29   4.6  
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)           29   6.1  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_48008| Best HMM Match : M (HMM E-Value=0.0068)                      28   8.0  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  292 bits (716), Expect = 3e-79
 Identities = 139/166 (83%), Positives = 152/166 (91%)
 Frame = +3

Query: 144 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 323
           RPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKDP+RLFEGNAL
Sbjct: 15  RPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKDPRRLFEGNAL 74

Query: 324 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 503
           LRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRV
Sbjct: 75  LRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 134

Query: 504 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGTCQEEEPPQGTG 641
           RKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPG  + +   +G G
Sbjct: 135 RKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQG 180


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 30/123 (24%), Positives = 61/123 (49%)
 Frame = +3

Query: 171 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 350
           +E+K++ +Y ++ + +  +       I+  A ++  L+ KDP R+     +L +L  +G+
Sbjct: 28  REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRVEATEQILEKLHNMGL 87

Query: 351 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 530
           +  K+  L     +    F  RRL   +    +A+ +  A   I Q H+RV  +V+  P+
Sbjct: 88  ISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146

Query: 531 FIV 539
           F+V
Sbjct: 147 FLV 149


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 144 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 299
           RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 58  RPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1019

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 223 HTSRLLRRPYSPMIFNSWSRRAFSKGRARCHVR 125
           H S + R    P   +SW   AFSK + RCHVR
Sbjct: 303 HASPVPRDEPPPKPGHSWRIDAFSKRKHRCHVR 335


>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
          Length = 499

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = -3

Query: 405 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRG*GAHEQPYGYERACI*R 226
           SP+ +D  H  VSSV    LQ   DD   H L+  ++ PS     +++  +  +     +
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPSE----SNKTEFITKATERLK 273

Query: 225 AILHACCGDRTLR 187
            ++H+C G + +R
Sbjct: 274 TLVHSCSGKKAIR 286


>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
          Length = 398

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +3

Query: 249 IRKAARELLTLEEKDPKRL-------FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDF 407
           + K  R   T  EKDPKR+       + G AL   ++ +G+  E   +  Y LGL +E+ 
Sbjct: 100 VGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECD-EAAYQLGLDMEEL 158

Query: 408 LERRLQTQVFKAGLAK 455
            E      +   GL +
Sbjct: 159 EEMEEDAGLGNGGLGR 174


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
 Frame = +3

Query: 201  LRNKREVWRVKYTLARIRKAARELLTLE--EKDPKR--LFEGNA--LLRRLVRIGVL--D 356
            L N  E W  +   AR+R+   +L+ L+  +KD KR  + E  A  L+ R   +     D
Sbjct: 1180 LTNTAEAWTQEQREARLRELKDKLVALDPADKDQKRSVMLEAAAIKLVSRKAHLAKSRED 1239

Query: 357  EKQMKLDYVLGLKIEDF-LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ--VVNIP 527
              ++  D V+   I D   E+  +++   A + +      I +++ HI  R Q  + N+ 
Sbjct: 1240 GSEVPRDEVMISLIADLQQEQDKESEGVLASMQEKDKDGLIALQKEHIAARAQDTLANVR 1299

Query: 528  SFIVRLDSGKHID 566
            + + R + G   D
Sbjct: 1300 AVLTRGEEGVAAD 1312


>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 255 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 374
           ++A ELL   EK+ KRL E NA L    R  V++ +++KL
Sbjct: 24  RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63


>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
          Length = 1068

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
 Frame = +3

Query: 96  TTEYRRYFQRRT*HLARPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 275
           T++YR   Q     ++R      L+ ++KI+ E+    K+E+  +K     + +   ELL
Sbjct: 543 TSKYRDLLQGENTLVSRSVAVDSLEADVKILREHESELKKEMTSLKERNHNLEQMLNELL 602

Query: 276 -------TLEEKDPKRLFEGNALLRRLVRI 344
                  T+ E  P R  E N + R+L  +
Sbjct: 603 AKDSGQQTVGESSPARQEEINRISRKLATL 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,568,438
Number of Sequences: 59808
Number of extensions: 467322
Number of successful extensions: 1180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)