Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B13
         (824 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   255   3e-68
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   252   2e-67
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    45   7e-05
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ...    30   2.1  
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    29   5.0  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   6.5  
At1g43730.1 68414.m05028 hypothetical protein                          28   6.5  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  255 bits (624), Expect = 3e-68
 Identities = 117/154 (75%), Positives = 139/154 (90%)
 Frame = +3

Query: 144 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 323
           RP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P+R+FEG AL
Sbjct: 19  RPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEAL 78

Query: 324 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 503
           LRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV
Sbjct: 79  LRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRV 138

Query: 504 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPG 605
            KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPG
Sbjct: 139 GKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPG 172


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  252 bits (617), Expect = 2e-67
 Identities = 117/164 (71%), Positives = 141/164 (85%)
 Frame = +3

Query: 144 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 323
           RP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARELLTL+EK+P+R+FEG AL
Sbjct: 19  RPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEAL 78

Query: 324 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 503
           LRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV
Sbjct: 79  LRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRV 138

Query: 504 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGTCQEEEPPQG 635
            +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPG  +      G
Sbjct: 139 GRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 29/123 (23%), Positives = 56/123 (45%)
 Frame = +3

Query: 171 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 350
           +E +I   Y + ++ +  +       ++K    +  ++  DP R+   + LL +L  +GV
Sbjct: 27  RENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGV 86

Query: 351 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 530
           +  ++  L     L +  F  RRL T +     A+    A   I Q H+RV  + +  P+
Sbjct: 87  IPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPA 145

Query: 531 FIV 539
           F+V
Sbjct: 146 FLV 148


>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
           unknown protein (pir||T00468); contains Pfam PF00684 :
           DnaJ central domain (4 repeats)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 664 LHHWRXRHPVPCGGSSS*HVPGRPPPNGDFREKSMCLPESRRTIND 527
           L H   R  + C   S+     RPPP+GD    + C+ E   T+ D
Sbjct: 40  LFHGSSRSLLSCSDGSN----NRPPPSGDTVPNNFCIIEGSETVQD 81


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 587 EWRFQREVNVLARVQAHN 534
           E RF REVN+++RVQ HN
Sbjct: 60  ESRFVREVNMMSRVQHHN 77


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 362 TDETRLCAWSED*GLLGASSADAGVQSW 445
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 480 SKFWHDGWTSPGQL 439
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,439
Number of Sequences: 28952
Number of extensions: 322544
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)