Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B12
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             188   7e-48
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                36   0.057
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        30   2.1  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  188 bits (457), Expect = 7e-48
 Identities = 85/98 (86%), Positives = 92/98 (93%)
 Frame = +3

Query: 87  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 266
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 267 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 380
           ++ LPKLY KLHYCVSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVVRNRSKEDRKIRTPP 98


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 162 CAR-CVPKDKAIKKFVIRNIVEAAAVRD--INDASVYPMFQLPKLYAKLHYC--VS--CA 320
           C R C+ +D+ I  FVI     AAAVRD  + D ++Y      +       C  VS  C 
Sbjct: 664 CERDCIMRDRTICDFVICG--RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCL 721

Query: 321 IHSKVVRNRSKKDRRIR 371
           IH +VVR+   +DR IR
Sbjct: 722 IHDRVVRDCVMRDRVIR 738


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +3

Query: 12  TTHYREFLRFAFPAVLCSPGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKA 191
           T  Y+     AFP + C+P ++ +N            HG GH+++   T   R   +++ 
Sbjct: 72  TEGYQPTYAEAFPPLPCAPSTD-QNQANSNPAAKWRTHGTGHIRSTTVTQVFRVPLEERR 130

Query: 192 IKKF 203
            K F
Sbjct: 131 YKLF 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,139,598
Number of Sequences: 59808
Number of extensions: 294508
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)