Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B11
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    27   2.8  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    27   4.8  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   8.4  

>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 527 IESLAEVHSGI*QLLISGQGALAVVLPAVPGIEAVTFVNFLSAFRCLSDVVSQEVGAL 354
           + S A   SG+ Q+L + Q  L+++LP +     V F       R +SD  ++E G L
Sbjct: 424 VVSAAVGQSGLNQVLNASQVCLSILLPFLT-FPLVMFTCSRKVMRVVSDSTNEETGQL 480


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -3

Query: 148 LVNVLASEPTQRTTK-AKIINFCISIVSFELQVT----ESKS*EFPY 23
           L N L++   +  TK AK++NFCI I  F + +     E ++  FPY
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNVFLVWSRLEKRAALFPY 109


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
 Frame = -3

Query: 403  AHFAALVMSSVRRSEHLTLQSLPGLAPLLHQYRSLIWNNP*SFEPLRFVFVLDVSRL-LS 227
            A+   + ++ +R +    L +   +A  L  +  L++ N  +       F+LD      +
Sbjct: 828  AYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNL--CAHEFILDAREFKAT 885

Query: 226  CSTRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCISIVSFELQVTE 47
                 T    R         + + P + N L  EPT+  +  ++  FC +++S   ++ E
Sbjct: 886  AGVDATDIAKRLQDYSFHAPTLSWP-IANTLMIEPTESESMYEMDRFCDALISIRQEIRE 944


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,703
Number of Sequences: 5004
Number of extensions: 40664
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)