Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B10
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 142 2e-34
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 2.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.4
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 3.4
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 3.4
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 3.4
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 6.0
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 6.0
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 142 bits (345), Expect = 2e-34
Identities = 77/158 (48%), Positives = 96/158 (60%)
Frame = +1
Query: 94 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 273
M +PK + IYEYLF EGV VAKKD++A H +E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 274 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 453
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119
Query: 454 AYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGXP 567
AYR +K + GPG A + ++ G+GRG P
Sbjct: 120 AYRT----------EKVTEAGPGGAPV-YRAGFGRGAP 146
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 403 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 492
G V RP APAR A + R PAAP P
Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAPANVP 62
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 403 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGXPA 570
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 403 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGXPA 570
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 403 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGXPA 570
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 403 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGXPA 570
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +1
Query: 403 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 561
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +1
Query: 403 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 561
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 415 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 537
+ D+ + S++D + ++TPA P KKA+ S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 415 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 543
+ D+ + S++D + ++TPA P KKA+ S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 538 IQDQLSLDQHQPFYHEVQHQGQQE 467
+Q+Q + Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 400 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGXP 567
+GP G P APA+ PA +P A PGS G GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 400 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGXP 567
+GP G P APA+ PA +P A PGS G GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 400 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGXPA 570
+GP G+P P + A R PA AP A PG A + +G P+
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPS 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,149,550
Number of Sequences: 27780
Number of extensions: 302540
Number of successful extensions: 996
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -