Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B09
         (849 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.76 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.76 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 524 SHHNPAPASIWRNHQCCXWFSVFAGRVASPEPTLIRRRTLKRPLI 390
           S  +P  AS W   +   W S+ A      EP LI+ R L+  +I
Sbjct: 384 SFKSPYKASCWAQFKAVLWRSILA---VFKEPLLIKVRLLQTLII 425


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 524 SHHNPAPASIWRNHQCCXWFSVFAGRVASPEPTLIRRRTLKRPLI 390
           S  +P  AS W   +   W S+ A      EP LI+ R L+  +I
Sbjct: 384 SFKSPYKASCWAQFKAVLWRSILA---VFKEPLLIKVRLLQTLII 425


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = -2

Query: 545  YIAHERRSHHNPAPASIWRN--HQCCXW 468
            Y+    R HH P P+++  N     C W
Sbjct: 935  YMCEGERKHHMPCPSNLVFNPDQNVCDW 962


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,923
Number of Sequences: 336
Number of extensions: 3240
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)