Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B09
(849 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 36 0.036
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 36 0.036
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 36 0.036
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 30 1.8
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 4.2
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 4.2
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 28 9.6
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 28 9.6
AC006730-1|AAK72090.1| 324|Caenorhabditis elegans Serpentine re... 28 9.6
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 35.9 bits (79), Expect = 0.036
Identities = 24/65 (36%), Positives = 29/65 (44%)
Frame = +2
Query: 653 GFYLLAGPFVSALANKYXXRVVTXSEV*FPSFAFPGLLLXNQRXIXLYPSTV*WGGIXLX 832
G YLL GP VSAL NKY R V + AF + + V GG+
Sbjct: 123 GTYLLVGPLVSALCNKYEQRYVVMAGGLISGIAFMIAPASPNIYVFMLIYGV-MGGLGFG 181
Query: 833 MIYIP 847
MIY+P
Sbjct: 182 MIYLP 186
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 35.9 bits (79), Expect = 0.036
Identities = 24/65 (36%), Positives = 29/65 (44%)
Frame = +2
Query: 653 GFYLLAGPFVSALANKYXXRVVTXSEV*FPSFAFPGLLLXNQRXIXLYPSTV*WGGIXLX 832
G YLL GP VSAL NKY R V + AF + + V GG+
Sbjct: 68 GTYLLVGPLVSALCNKYEQRYVVMAGGLISGIAFMIAPASPNIYVFMLIYGV-MGGLGFG 126
Query: 833 MIYIP 847
MIY+P
Sbjct: 127 MIYLP 131
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 35.9 bits (79), Expect = 0.036
Identities = 24/65 (36%), Positives = 29/65 (44%)
Frame = +2
Query: 653 GFYLLAGPFVSALANKYXXRVVTXSEV*FPSFAFPGLLLXNQRXIXLYPSTV*WGGIXLX 832
G YLL GP VSAL NKY R V + AF + + V GG+
Sbjct: 123 GTYLLVGPLVSALCNKYEQRYVVMAGGLISGIAFMIAPASPNIYVFMLIYGV-MGGLGFG 181
Query: 833 MIYIP 847
MIY+P
Sbjct: 182 MIYLP 186
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 653 GFYLLAGPFVSALANKYXXRVVT 721
GF L AGP SA+ NKY R+ T
Sbjct: 68 GFTLGAGPLASAVCNKYGCRITT 90
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = -2
Query: 569 REYDAIN*YIAHERRSHHNPAPA--------SIWRNHQCCXWFSVFAGRVAS 438
REY+++N ++ H R H +P P+ + R H C F+ GR A+
Sbjct: 966 REYESLNQFVDHLTRFHTHPCPSCGKAFSSQNTRRTHVCSRLFAEIKGRGAT 1017
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = -2
Query: 569 REYDAIN*YIAHERRSHHNPAPA--------SIWRNHQCCXWFSVFAGRVAS 438
REY+++N ++ H R H +P P+ + R H C F+ GR A+
Sbjct: 966 REYESLNQFVDHLTRFHTHPCPSCGKAFSSQNTRRTHVCSRLFAEIKGRGAT 1017
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 452 GRVASPEPTLIRRRTLKRPLICCYPHHH 369
GR+AS LI + R + CYPHHH
Sbjct: 150 GRIAST--FLITAMSFDRYVAVCYPHHH 175
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 578 QTSREYD-AIN*YIAHERRSHHNPAPASIWRNHQCCXWFSV-FAGRVASPEPTLIRRRTL 405
+T E++ AI Y NP+ A RN QC W S+ + V + EP I T
Sbjct: 307 RTCHEFNCAIAHYNPLNGHCEFNPSTAFAIRNGQCPEWPSLHYRNNVVANEPVRIFCVTC 366
Query: 404 KRP 396
+RP
Sbjct: 367 QRP 369
>AC006730-1|AAK72090.1| 324|Caenorhabditis elegans Serpentine
receptor, class i protein33 protein.
Length = 324
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 82 TLSFRINRIKIIY*VL-SYKLTKEFHFLLGNSFKCCNFSLKIS 207
T+SF +N + I + SYK+ ++LLG C N+ L+++
Sbjct: 20 TISFVLNFLVIFLIIFKSYKVDSFQYYLLGFQISCTNYVLQLT 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,133
Number of Sequences: 27780
Number of extensions: 310272
Number of successful extensions: 619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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