Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B07
         (1259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.77 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = +2

Query: 1079 QQKIFFLXPPPPXXXLSPXPPXGGXRXRXGXXXFFFLGPRXXXSXPXXXGXXKXPPPPPP 1258
            QQK+    PPPP   +    P                GP      P   G    PPPPPP
Sbjct: 724  QQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMG-GPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 1191 GRAPXLPXPPXXGXKXXPPPPPP 1259
            G  P  P PP       PPPPPP
Sbjct: 759  GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 1206 LPXPPXXGXKXXPPPPPP 1259
            +P PP       PPPPPP
Sbjct: 749  IPVPPPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 1191 GRAPXLPXPPXXGXKXXPPPPPP 1259
            G  P  P PP       PPPPPP
Sbjct: 7    GNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,362
Number of Sequences: 5004
Number of extensions: 24313
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)