Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B07
(1259 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.080
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.080
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.080
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.56
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.56
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 32 0.98
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 32 0.98
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 32 0.98
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.3
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 31 1.7
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 31 2.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 2.3
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 30 3.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 30 3.0
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 30 3.0
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 4.0
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 30 4.0
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.3
U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical p... 29 5.3
U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical p... 29 5.3
AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical ... 29 5.3
AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical ... 29 5.3
AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical ... 29 5.3
AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical ... 29 5.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 6.9
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 6.9
AF067219-2|AAC17035.1| 74|Caenorhabditis elegans Hypothetical ... 29 9.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 9.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 9.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 9.2
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 24 9.4
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 24 9.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.5 bits (78), Expect = 0.080
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +3
Query: 1131 PXPPRGGGX---GGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPPP 1259
P PP GG GG G P P PP G K PPPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.5 bits (78), Expect = 0.080
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +3
Query: 1131 PXPPRGGGX---GGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPPP 1259
P PP GG GG G P P PP G K PPPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.5 bits (78), Expect = 0.080
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +3
Query: 1131 PXPPRGGGX---GGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPPP 1259
P PP GG GG G P P PP G K PPPPPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.56
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 1258 GGGGGGXFXXPXXGGXGXXGARPQKEKXXXPXPPXPPP 1145
GGGGGG G G G P PP PPP
Sbjct: 275 GGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPPP 312
Score = 30.3 bits (65), Expect = 3.0
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -2
Query: 1258 GGGGGGXFXXPXXGGXGXXGARPQKEKXXXPXPPXPPP 1145
GGGGGG G G P PP PPP
Sbjct: 274 GGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPP 311
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.56
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 1258 GGGGGGXFXXPXXGGXGXXGARPQKEKXXXPXPPXPPP 1145
GGGGGG G G G P PP PPP
Sbjct: 275 GGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPPP 312
Score = 30.3 bits (65), Expect = 3.0
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -2
Query: 1258 GGGGGGXFXXPXXGGXGXXGARPQKEKXXXPXPPXPPP 1145
GGGGGG G G P PP PPP
Sbjct: 274 GGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPP 311
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 31.9 bits (69), Expect = 0.98
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +3
Query: 1122 PSXPXPPRGGGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPPP 1259
P P PP GG + G P P PP PPPPPP
Sbjct: 215 PPAPPPPIGG------IAPVNAHGAPPPPPLPPVGAGAPPPPPPPP 254
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 31.9 bits (69), Expect = 0.98
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +3
Query: 1122 PSXPXPPRGGGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPPP 1259
P P PP GG + G P P PP PPPPPP
Sbjct: 201 PPAPPPPIGG------IAPVNAHGAPPPPPLPPVGAGAPPPPPPPP 240
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 31.9 bits (69), Expect = 0.98
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +3
Query: 1122 PSXPXPPRGGGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPPP 1259
P P PP GG + G P P PP PPPPPP
Sbjct: 201 PPAPPPPIGG------IAPVNAHGAPPPPPLPPVGAGAPPPPPPPP 240
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -2
Query: 1258 GGGGGGXFXXPXXGGXGXXGARPQKEKXXXPXPPXPPPRGGXG 1130
GGGGGG GG G G P PP P GG G
Sbjct: 24 GGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCG 66
Score = 25.0 bits (52), Expect(2) = 3.7
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 1149 GGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPPP 1259
GG GG G G G PPPPPP
Sbjct: 80 GGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPP 116
Score = 23.4 bits (48), Expect(2) = 3.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 1122 PSXPXPPRGGGXGGXG 1169
P P P GGG GG G
Sbjct: 54 PPPPPPACGGGCGGGG 69
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 1191 GRAPXLPXPPXXGXKXXPPPPPP 1259
G P P PP G PPPPPP
Sbjct: 282 GMTPRPPPPPSSGMWPPPPPPPP 304
Score = 31.1 bits (67), Expect = 1.7
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +2
Query: 1070 PPPQQKIFFLXPP-PPXXXLSPXPPXGGXRXRXGXXXFFFLGPRXXXSXPXXXGXXKXPP 1246
PPP + + PP PP ++P PP P P G PP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPP-----PPPPGRTPGPPGMPGMPP 318
Query: 1247 PPPP 1258
PPPP
Sbjct: 319 PPPP 322
Score = 29.5 bits (63), Expect = 5.3
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = +2
Query: 1070 PPPQQKIFFLXPPPPXXXLSPXPPXGGXRXRXGXXXFF---FLGPRXXXSXPXXXGXXKX 1240
PPP + PPPP +P PP F +G P
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGM 347
Query: 1241 PPPPPP 1258
PPPPPP
Sbjct: 348 PPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 1191 GRAPXLPXPPXXGXKXXPPPPPP 1259
G P P PP G PPPPPP
Sbjct: 292 GMTPRPPPPPSSGMWPPPPPPPP 314
Score = 31.1 bits (67), Expect = 1.7
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +2
Query: 1070 PPPQQKIFFLXPP-PPXXXLSPXPPXGGXRXRXGXXXFFFLGPRXXXSXPXXXGXXKXPP 1246
PPP + + PP PP ++P PP P P G PP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPP-----PPPPGRTPGPPGMPGMPP 328
Query: 1247 PPPP 1258
PPPP
Sbjct: 329 PPPP 332
Score = 29.5 bits (63), Expect = 5.3
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = +2
Query: 1070 PPPQQKIFFLXPPPPXXXLSPXPPXGGXRXRXGXXXFF---FLGPRXXXSXPXXXGXXKX 1240
PPP + PPPP +P PP F +G P
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGM 357
Query: 1241 PPPPPP 1258
PPPPPP
Sbjct: 358 PPPPPP 363
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -2
Query: 1258 GGGGGGXFXXPXXGGXGXXGARPQKEKXXXPXPPXPPPRGGXG 1130
GGGGGG GG G R PP PPP GG G
Sbjct: 189 GGGGGGMGGGGGSGGSGGGSGR---------FPPPPPPYGGGG 222
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 1140 PRGGGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXP--PPPPP 1259
P GG GG G + AP P PP G P PPPPP
Sbjct: 21 PMAGGGGGGGGCAPAAPACAP--PPPPMCGCAPPPPPPPPPP 60
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +2
Query: 1106 PPPXXXLSPXPPXGGXRXRXGXXXFFFLGPRXXXSXPXXXGXXKXPPPPPP 1258
PPP + P PP G G + P P PPPPPP
Sbjct: 535 PPPVSSIPPPPPIAGLLAANGTN--VPIPPPPPPPLPQNLSGAPPPPPPPP 583
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical protein
F45B8.3 protein.
Length = 241
Score = 30.3 bits (65), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 1197 APXLPXPPXXGXKXXPPPPPP 1259
AP P PP PPPPPP
Sbjct: 107 APCCPPPPAPAAPCCPPPPPP 127
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = +2
Query: 1070 PPPQQKIFFLXPPPPXXXLSPXPPXGGXRXRXGXXXFFFLGPRXXXSXPXXXGXXKXPPP 1249
PPPQ + ++ PPPP P P GG + + P P PPP
Sbjct: 682 PPPQGQQYYGGPPPPG---QPYGPPGGYPPQQQRPP-YQAQPYPGPPPPQQQRGYGYPPP 737
Query: 1250 PPP 1258
P P
Sbjct: 738 PQP 740
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like protein
protein.
Length = 789
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = +2
Query: 1070 PPPQQKIFFLXPPPPXXXLSPXPPXGGXRXRXGXXXFFFLGPRXXXSXPXXXGXXKXPPP 1249
PPPQ + ++ PPPP P P GG + + P P PPP
Sbjct: 682 PPPQGQQYYGGPPPPG---QPYGPPGGYPPQQQRPP-YQAQPYPGPPPPQQQRGYGYPPP 737
Query: 1250 PPP 1258
P P
Sbjct: 738 PQP 740
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical protein
ZC168.5 protein.
Length = 172
Score = 29.9 bits (64), Expect = 4.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 1200 PXLPXPPXXGXKXXPPPPPP 1259
P P PP G PPPPPP
Sbjct: 40 PPPPPPPCGGGYEAPPPPPP 59
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like (grd
related) protein29 protein.
Length = 172
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -2
Query: 1258 GGGGGGXFXXPXXGGXGXXGARPQKEKXXXPXPPXPPPRGGXG 1130
GGG GG GG G G P PP PPP+ G G
Sbjct: 40 GGGCGGGCGYGGGGGCGYGGGYG----CGIPPPPPPPPQCGCG 78
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 5.3
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Frame = +2
Query: 1073 PPQQKI----FFLXPPPPXXXLSPXPPXGGXRXRXGXXXFFFLG----PRXXXSXPXXXG 1228
PP Q I FF+ PP P + P P GG F G P P
Sbjct: 53 PPGQSIPKPSFFIPPPVPNGFIPPPPGPGGI---PPPPPMFAGGIPPPPPMMGGIPPPPP 109
Query: 1229 XXKXPPPPPP 1258
PPPPPP
Sbjct: 110 MFGAPPPPPP 119
>U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical
protein F01F1.1c protein.
Length = 641
Score = 29.5 bits (63), Expect = 5.3
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 1125 SXPXPPRGGGXGGXGXXXFSFWGRAPXLPXPP 1220
S P PP G G G S WG P +P PP
Sbjct: 54 SFPNPPSAYGQFGGGFHP-STWGSGPIVPPPP 84
>U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical
protein F01F1.1a protein.
Length = 646
Score = 29.5 bits (63), Expect = 5.3
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 1125 SXPXPPRGGGXGGXGXXXFSFWGRAPXLPXPP 1220
S P PP G G G S WG P +P PP
Sbjct: 59 SFPNPPSAYGQFGGGFHP-STWGSGPIVPPPP 89
>AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical
protein Y37A1B.2d protein.
Length = 564
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +3
Query: 1131 PXPPRGGGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPP 1256
P PP G F WG A + PP G + P P
Sbjct: 71 PLPPTSSGPPAASSRPFDDWGGASEVAAPPSYGAQHHHQPTP 112
>AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical
protein Y37A1B.2c protein.
Length = 566
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +3
Query: 1131 PXPPRGGGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPP 1256
P PP G F WG A + PP G + P P
Sbjct: 71 PLPPTSSGPPAASSRPFDDWGGASEVAAPPSYGAQHHHQPTP 112
>AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical
protein Y37A1B.2b protein.
Length = 592
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +3
Query: 1131 PXPPRGGGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPP 1256
P PP G F WG A + PP G + P P
Sbjct: 97 PLPPTSSGPPAASSRPFDDWGGASEVAAPPSYGAQHHHQPTP 138
>AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical
protein Y37A1B.2a protein.
Length = 164
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +3
Query: 1131 PXPPRGGGXGGXGXXXFSFWGRAPXLPXPPXXGXKXXPPPPP 1256
P PP G F WG A + PP G + P P
Sbjct: 71 PLPPTSSGPPAASSRPFDDWGGASEVAAPPSYGAQHHHQPTP 112
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 6.9
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = +3
Query: 1149 GGXGGXGXXXFSFW-----GRAPXLPXPPXXGXKXXPPPPPP 1259
G GG G W G + +P PP G PPPPP
Sbjct: 637 GARGGAGAKANKGWYGSGGGSSMPMPVPPPGGLGGFMPPPPP 678
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 6.9
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = +3
Query: 1149 GGXGGXGXXXFSFW-----GRAPXLPXPPXXGXKXXPPPPPP 1259
G GG G W G + +P PP G PPPPP
Sbjct: 637 GARGGAGAKANKGWYGSGGGSSMPMPVPPPGGLGGFMPPPPP 678
>AF067219-2|AAC17035.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.14 protein.
Length = 74
Score = 28.7 bits (61), Expect = 9.2
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Frame = -2
Query: 1258 GGGGGGXFXXPXXGGXG--XXGARPQKEKXXXPXPP--XPPPRGG 1136
GGGG G P G G GA PQ P PP P+GG
Sbjct: 23 GGGGAGGCCPPAQPGCGNPCQGAGPQYAAAPPPPPPQYAAAPQGG 67
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 9.2
Identities = 22/69 (31%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = +2
Query: 1058 RAXXPPPQQKIFFLXPPPPXXXLSPXPPXGG----XRXRXGXXXFFFLGPRXXXSXPXXX 1225
R PPP PPPP SP PP G G L P P
Sbjct: 268 RTGSPPPPPTG---SPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 324
Query: 1226 GXXKXPPPP 1252
G PPPP
Sbjct: 325 GTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 9.2
Identities = 22/69 (31%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = +2
Query: 1058 RAXXPPPQQKIFFLXPPPPXXXLSPXPPXGG----XRXRXGXXXFFFLGPRXXXSXPXXX 1225
R PPP PPPP SP PP G G L P P
Sbjct: 289 RTGSPPPPPTG---SPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 345
Query: 1226 GXXKXPPPP 1252
G PPPP
Sbjct: 346 GTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 9.2
Identities = 22/69 (31%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = +2
Query: 1058 RAXXPPPQQKIFFLXPPPPXXXLSPXPPXGG----XRXRXGXXXFFFLGPRXXXSXPXXX 1225
R PPP PPPP SP PP G G L P P
Sbjct: 274 RTGSPPPPPTG---SPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 330
Query: 1226 GXXKXPPPP 1252
G PPPP
Sbjct: 331 GTGSPPPPP 339
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
C33B4.3a protein.
Length = 1110
Score = 24.2 bits (50), Expect(2) = 9.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 1168 PXPPXPPPRGG 1136
P PP PPP GG
Sbjct: 808 PPPPPPPPPGG 818
Score = 22.6 bits (46), Expect(2) = 9.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 1189 QKEKXXXPXPPXPPP 1145
Q+++ P PP PPP
Sbjct: 758 QQQQSSIPPPPPPPP 772
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical protein
C33B4.3b protein.
Length = 993
Score = 24.2 bits (50), Expect(2) = 9.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 1168 PXPPXPPPRGG 1136
P PP PPP GG
Sbjct: 808 PPPPPPPPPGG 818
Score = 22.6 bits (46), Expect(2) = 9.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 1189 QKEKXXXPXPPXPPP 1145
Q+++ P PP PPP
Sbjct: 758 QQQQSSIPPPPPPPP 772
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,005,345
Number of Sequences: 27780
Number of extensions: 228670
Number of successful extensions: 3028
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3505977888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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