Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B07
         (1259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   9.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 1168 PXPPXPPPRGG 1136
            P PP PP RGG
Sbjct: 374  PLPPPPPIRGG 384


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 1233 KXXPPPPPP 1259
            K  PPPPPP
Sbjct: 340  KPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 1168 PXPPXPPPRGG 1136
            P PP PPP  G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 1168 PXPPXPPPR 1142
            P PP PPPR
Sbjct: 1857 PEPPPPPPR 1865


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 1179 FSFWGRAPXLPXPPXXGXKXXP 1244
            F+FW   P +P P   G    P
Sbjct: 1161 FNFWNPPPFMPSPFMAGAPNVP 1182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,580
Number of Sequences: 438
Number of extensions: 4297
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)