Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B05
         (962 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.88 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   1.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   1.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.5  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.2  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
 Frame = +1

Query: 844 VPXPXPXPPIXXPPPPXPXX----NPPXPXPXXPPPXPPPXXP 960
           +P   P P I  P P  P      N   P P  PP   PP  P
Sbjct: 148 MPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFP 190



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 867 PXXLSPPXXPXPQPPPPXPPXXPXXXPPPXPP 962
           P    PP        PP P   P   PP  PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +2

Query: 854  PXXXPXSPXPPXPPPPXTPPXPXPXXP 934
            P   P    PP PP    PP P    P
Sbjct: 1367 PEWQPTEWHPPIPPTSEKPPLPEELKP 1393


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
 Frame = +1

Query: 844 VPXPXPXPPIXXPPPPXPXX----NPPXPXPXXPP-PXPPPXXP 960
           +P   P P I  P P  P      N   P P  PP P PP   P
Sbjct: 148 MPKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 629 PXPXPXXPXRPPPXPXGAP 685
           P P P  P  P P P  +P
Sbjct: 80  PEPDPEIPVAPEPAPLASP 98



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 853 PXPXPPIXXPPPPXPXXNPPXPXP 924
           P P P I   P P P  +P    P
Sbjct: 80  PEPDPEIPVAPEPAPLASPLVQEP 103


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 871 IXXPPPPXPXXNPP 912
           +  PPPP P   PP
Sbjct: 733 VKLPPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 871 IXXPPPPXPXXNPP 912
           +  PPPP P   PP
Sbjct: 625 VKLPPPPHPHHQPP 638


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
 Frame = +1

Query: 556 RPSGLXPXXPAPXPXXPXP--AXAXPPXPKXPXPXXPPP 666
           RP  L P    P P    P  A      P  P    PPP
Sbjct: 67  RPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,332
Number of Sequences: 336
Number of extensions: 2502
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27202879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)