Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B04
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.16 
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    29   0.64 
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   6.0  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 279 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 172
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 126 FILPKFYSAGEFKIPNTISFDANAKNDQILRIPYSEXVV 10
           F+L  FY+A      NT S   N KND  +RI +S   V
Sbjct: 373 FVLAAFYTASLLTNWNTTSVYENQKNDVFVRIGFSYAAV 411


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 183  LTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDANAKNDQILRIPYSEXV 13
            LT   ++   K    I +      F+  G  KIP   SFD   K+ +   IP+++ +
Sbjct: 842  LTKDISTVKRKEYFGIESTSSKQPFHDTGSIKIPAKRSFDTIDKDFRSSNIPFADKI 898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,784
Number of Sequences: 5004
Number of extensions: 46222
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)