Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B04
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24330.1 68416.m03055 glycosyl hydrolase family 17 protein si...    28   9.2  
At1g52260.1 68414.m05897 thioredoxin family protein similar to p...    28   9.2  

>At3g24330.1 68416.m03055 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 500

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -1

Query: 408 FR*DLRSFKLEIHNYLQ-----YCFKLNASLVLYHEVYFPKDFA 292
           FR +LR   +EI N+L      +   +   L LY   YFP DFA
Sbjct: 192 FRPELRDATIEIINFLYSHDSPFTVNIYPFLSLYGNAYFPLDFA 235


>At1g52260.1 68414.m05897 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 537

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 168 ASTNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDANAKN 49
           AS N  TKL++  K+ +   Y +GE + P  +S   +AK+
Sbjct: 477 ASANEHTKLQVDDKYPIILLYKSGEKEKPLKLSTKLSAKD 516


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,571
Number of Sequences: 28952
Number of extensions: 228112
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)