Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B03
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 34 0.029
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.63
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.84
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.9
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.4
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.4
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 27 3.4
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 5.9
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 7.8
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 7.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.9 bits (74), Expect = 0.029
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +3
Query: 486 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPS 665
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Query: 666 TPLVP*APPCT 698
P + P T
Sbjct: 413 VPPTSSSTPLT 423
Score = 32.7 bits (71), Expect = 0.068
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +3
Query: 486 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPS 665
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST--TPVTPT 358
Query: 666 TP 671
P
Sbjct: 359 VP 360
Score = 32.3 bits (70), Expect = 0.090
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 486 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 662
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 663 STP 671
+ P
Sbjct: 250 TVP 252
Score = 29.9 bits (64), Expect = 0.48
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 486 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 662
+TP P S S+P P T+ + S P T ST S T + T +ST P+TP
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPPTGNST--TPVTP 303
Query: 663 STP 671
+ P
Sbjct: 304 TVP 306
Score = 26.2 bits (55), Expect = 5.9
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +3
Query: 477 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSI--TRKVLXMTVSSTVI 647
L++ TP T P S S W TT T S T+ST + T + SST I
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 648 APLTPST 668
+ + ST
Sbjct: 658 STSSSST 664
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 568 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 467
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 212 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 355
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 179 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 295
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 650 TADTFNTTGTLSPSMYESXVMFXVYN-REY 736
T FN +GTL+P ++ S V + N RE+
Sbjct: 915 TLSVFNNSGTLTPELFSSVVRIVLKNVREF 944
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 812 PXXPPRVSRLLVGGPYLSFKCHNTG 738
P PR+S G Y+ +KCHNTG
Sbjct: 127 PSGRPRISYPYPPG-YMCYKCHNTG 150
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 647 STADTFNTTGTLSPSMYESXVMFXVYNREYNQCY 748
S + T +TT TL+ M + F + +YN+CY
Sbjct: 2 SESQTESTTVTLTNGMVIPRIGFGAFMLKYNECY 35
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = -3
Query: 273 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 94
SL+ S FFS YSE + + + IYS S S S+ + A+ + + ++V
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL---NPAIYVNWTEPWGQEDEV 62
Query: 93 SLILAQWLSLKAVTTLKS 40
+++ W ++ + +S
Sbjct: 63 EVLIFNWKEIRKLGAFRS 80
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 416 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 508
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 315 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 136
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 135 EASAHTARTKA 103
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,283
Number of Sequences: 5004
Number of extensions: 70012
Number of successful extensions: 261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -