Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B03
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 31 0.88
03_01_0259 - 1996427-1998772 31 1.2
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 30 2.0
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.6
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 4.7
05_03_0469 + 14439472-14440905 29 6.2
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 28 8.2
05_03_0618 - 16262826-16263097,16263111-16263183 28 8.2
03_02_0950 + 12661008-12662312,12662403-12662576 28 8.2
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 8.2
>03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 31.5 bits (68), Expect = 0.88
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Frame = -2
Query: 328 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 182
V E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764
Query: 181 LLRQYVISSWCKCGVRSQRTHGEDEGKQSQSHLGAVVIFESSHNTQILRIPL 26
L + + C+ V S R HG +G+ + G +S TQ L + L
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQGGMASGGQNPRPSTSRGTQRLYVRL 815
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 392 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 496
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 572 STEDKQYLKLDNTKGSXDDRIIYGDSTADTFNTTGTLSPSMYESXVMF 715
S E +QY G D +STA NT G+ SP+M E+ F
Sbjct: 329 SNELEQYKMDSKASGDDSDCCSEAESTATVVNTEGSSSPNMKETDEYF 376
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 460 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 374
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 179 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 349
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 350 KEIVK 364
+ +
Sbjct: 551 DPMTR 555
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 486 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPP 578
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 637 DDTVIXRTFRVIELQVLFVLGGHDLEVNSVVFQHGGKLPGDFLAGFVFG 491
DDT V+ ++ VLGG D+ V F GG + L GF+FG
Sbjct: 155 DDTTTEDDLMVVSAELEKVLGGVDVASARVSFAMGGGVDCP-LQGFLFG 202
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 160 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 74
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 164 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 265
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 476 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 610
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,052,349
Number of Sequences: 37544
Number of extensions: 486720
Number of successful extensions: 1500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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