Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B03
(851 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.096
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.68
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) 30 2.7
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05) 29 6.3
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 8.4
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 8.4
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 34.7 bits (76), Expect = 0.096
Identities = 25/67 (37%), Positives = 30/67 (44%)
Frame = +3
Query: 489 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPST 668
TP T P+ S S P T T P T ST S+ + + T ST P TPST
Sbjct: 654 TPST-PSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTPSMPNT-PSTPSTPSTPST 711
Query: 669 PLVP*AP 689
P+ P P
Sbjct: 712 PITPGTP 718
Score = 32.7 bits (71), Expect = 0.39
Identities = 25/67 (37%), Positives = 29/67 (43%)
Frame = +3
Query: 489 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPST 668
TP T P+ S S P T S P T ST S+ + T ST P TPST
Sbjct: 104 TPST-PSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPSTPST-PSTPSTPSTPST 161
Query: 669 PLVP*AP 689
P+ P P
Sbjct: 162 PITPGTP 168
Score = 32.3 bits (70), Expect = 0.51
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 549 TEFTSRSCPPRTNST*SSITRKVLXMTVSS--TVIAPLTPSTPLVP*AP--PCT 698
T S C P T ST S+ + T S+ T P TPSTP+ P P PCT
Sbjct: 374 TSTPSTPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPRTPSTPCT 427
Score = 31.9 bits (69), Expect = 0.68
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +3
Query: 489 TPKTKPARKSPG--SLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 662
TP T R +P S P T S P T ST S+ + ST+ P+TP
Sbjct: 191 TPSTPSTRSTPSTPSTPSTPSTLSMPSTPSMPNTPSTPST-------PSTPSTLSTPITP 243
Query: 663 STPLVP*AP 689
STP P P
Sbjct: 244 STPSTPSTP 252
Score = 31.9 bits (69), Expect = 0.68
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +3
Query: 489 TPKTKPARKSPG--SLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 662
TP T R +P S P T S P T ST S+ + ST+ P+TP
Sbjct: 741 TPSTPSTRSTPSTPSTPSTPSTLSMPSTPSMPNTPSTPST-------PSTPSTLSTPITP 793
Query: 663 STPLVP*AP 689
STP P P
Sbjct: 794 STPSTPSTP 802
Score = 31.5 bits (68), Expect = 0.90
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 561 SRSCPPRTNST*SSITRKVLXMTVSS--TVIAPLTPSTPLVP*AP--PCT 698
S C P T ST S+ + T S+ T P TPSTP+ P P PCT
Sbjct: 13 STPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCT 62
Score = 31.5 bits (68), Expect = 0.90
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +3
Query: 489 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVS--STVIAPLTP 662
TP T P+ S S P T S P T ST S+ + T S ST P+TP
Sbjct: 107 TPST-PSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPITP 165
Query: 663 STPLVP*AP 689
TP P P
Sbjct: 166 GTPSTPSTP 174
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +3
Query: 489 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPST 668
TP T P+ S S P T S P T ST S+ + ST P+TP T
Sbjct: 660 TPST-PSTPSTPSTPSLTHTPSTPSTPSTPSTPST-PSMPNTPSTPSTPSTPSTPITPGT 717
Query: 669 PLVP*AP 689
P P P
Sbjct: 718 PSTPSTP 724
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +3
Query: 489 TPKTKPARKSPG--SLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 662
TP T +P S P T S P T ST S+ + T SST P TP
Sbjct: 445 TPSTPSLTHTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPST-SSTPSTPSTP 503
Query: 663 STPLVP*AP 689
STP P P
Sbjct: 504 STPSAPGTP 512
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 31.9 bits (69), Expect = 0.68
Identities = 25/63 (39%), Positives = 32/63 (50%)
Frame = +3
Query: 483 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 662
S++P + R S GSL P +T+ TSRS PR+ S + T ST P TP
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRS-TPRSRSRSRART--------PSTPSTPSTP 229
Query: 663 STP 671
STP
Sbjct: 230 STP 232
>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
Length = 260
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 330 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 196
W + +F++ SI + A+L F F H+ AV+YS T
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 209 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 376
Y + I K E+ KEK KG+ K R E GKR A +D E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 428 RDHHALKLIDQQNHNK-IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLD 604
R HH+ + + K + SKD T+ VS + + E ++ M+T +K +K+
Sbjct: 418 RRHHSFGGLPLEYREKRLRESSSKDNTNTSVSLEIKKIREAQKLIDAAMATSEKS-IKVG 476
Query: 605 NTKGSXDDR 631
+KG D +
Sbjct: 477 ESKGLWDSK 485
>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +1
Query: 391 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 570
DLH + Q +Q G + + + QQ ++ Q+Q QQ+ L + + + L
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617
Query: 571 VHR 579
+ +
Sbjct: 618 IEK 620
>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
Length = 435
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +2
Query: 419 INKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST-EDKQYL 595
+NK +H + D + IA+G + + ++ + PV E Y + T ED
Sbjct: 22 VNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASLPVYEKLWRYIETHGTLEDNATY 81
Query: 596 KLDNTKGSXDDRIIYGDSTAD 658
+D + D I+ + D
Sbjct: 82 AIDKVRSRDDYAFIWDSAVLD 102
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 239 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 328
+ +E+ GE EA KRLI+ GK+ M Y
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 492 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 593
P TK PP K T + R CPP T T
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 169
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 492 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 593
P TK PP K T + R CPP T T
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 183
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 492 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 593
P TK PP K T + R CPP T T
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 197
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 492 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 593
P TK PP K T + R CPP T T
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 211
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 492 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 593
P TK PP K T + R CPP T T
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 222
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,069,927
Number of Sequences: 59808
Number of extensions: 564181
Number of successful extensions: 1811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -