Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B03
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 35 0.084
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 33 0.34
AC024202-12|AAF36031.2| 143|Caenorhabditis elegans Hypothetical... 32 0.60
Z74029-4|CAA98429.2| 522|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z54342-6|CAA91148.1| 459|Caenorhabditis elegans Hypothetical pr... 31 1.0
DQ523831-1|ABF71876.1| 522|Caenorhabditis elegans P21-activated... 31 1.0
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 30 2.4
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 30 2.4
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81111-8|CAB03271.1| 238|Caenorhabditis elegans Hypothetical pr... 29 3.2
U53332-7|AAM15582.1| 379|Caenorhabditis elegans Ceramide glucos... 29 3.2
U53332-6|AAL32225.1| 470|Caenorhabditis elegans Ceramide glucos... 29 3.2
DQ178634-1|ABD75713.1| 470|Caenorhabditis elegans ceramide glyc... 29 3.2
DQ178633-1|ABD75712.1| 470|Caenorhabditis elegans ceramide glyc... 29 3.2
AL032662-1|CAA21758.1| 238|Caenorhabditis elegans Hypothetical ... 29 3.2
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 4.2
Z22180-4|CAA80178.1| 312|Caenorhabditis elegans Hypothetical pr... 28 7.3
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 28 7.3
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 28 7.3
U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 28 7.3
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z22173-2|CAA80126.1| 327|Caenorhabditis elegans Hypothetical pr... 28 9.7
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 9.7
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 28 9.7
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 28 9.7
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 28 9.7
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 28 9.7
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 28 9.7
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 28 9.7
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 34.7 bits (76), Expect = 0.084
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 483 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLT- 659
+VT T ++P TT S + PP ++T + +T+ V ST IAP+T
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466
Query: 660 PST 668
PST
Sbjct: 467 PST 469
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 492 PKTKPARKSPGSLPPCWKTTE--FTSRSCPPRTNST 593
PKT+P P ++P CW+ F PPR N+T
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453
>AC024202-12|AAF36031.2| 143|Caenorhabditis elegans Hypothetical
protein Y71H2B.1 protein.
Length = 143
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 182 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 295
LYM +G+Y+ A KC +Y K+ G+ EA++ I+
Sbjct: 87 LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125
>Z74029-4|CAA98429.2| 522|Caenorhabditis elegans Hypothetical
protein C45B11.1a protein.
Length = 522
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -3
Query: 273 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 94
++I P SFRY+ L ++ SPM ++ S S S+ V + ++ H+ R V
Sbjct: 76 TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135
Query: 93 S 91
S
Sbjct: 136 S 136
>Z54342-6|CAA91148.1| 459|Caenorhabditis elegans Hypothetical
protein C08H9.11 protein.
Length = 459
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 236 EYLKEKKGEVIKEA-VKRLIENGKRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQ 406
EY + E + VK ++ K+N +D WT+ E +KSY F + R FTE
Sbjct: 187 EYSRLVSNETSRNVFVKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE- 245
Query: 407 TVKLINKRDHHALKLI 454
K N+++ + + LI
Sbjct: 246 LQKRWNRKNEYIISLI 261
>DQ523831-1|ABF71876.1| 522|Caenorhabditis elegans P21-activated
kinase PAK-2 protein.
Length = 522
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -3
Query: 273 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 94
++I P SFRY+ L ++ SPM ++ S S S+ V + ++ H+ R V
Sbjct: 76 TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135
Query: 93 S 91
S
Sbjct: 136 S 136
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 489 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPST 668
T P + P T+ T+ + PP T +T + T T ++T TP+T
Sbjct: 651 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTT-PTTTTSTTTTTTTTTTTTQTTPTT 709
Query: 669 PLV 677
P+V
Sbjct: 710 PVV 712
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 489 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPST 668
T P + P T+ T+ + PP T +T + T T ++T TP+T
Sbjct: 707 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTT-PTTTTSTTTTTTTTTTTTQTTPTT 765
Query: 669 PLV 677
P+V
Sbjct: 766 PVV 768
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 489 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPST 668
T P + P T+ T+ + PP T +T + T T ++T TP+T
Sbjct: 530 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTT-PTTTTSTTTTTTTTTTTTQTTPTT 588
Query: 669 PLV 677
P+V
Sbjct: 589 PVV 591
>Z81111-8|CAB03271.1| 238|Caenorhabditis elegans Hypothetical
protein Y75B12A.2 protein.
Length = 238
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 555 FTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPS-TPLV 677
F +SC +T ST ++ + K T ++TV+ PS TP++
Sbjct: 116 FNGKSCQEKTTSTTTTTSTKTEIQTTTTTVLISEVPSTTPII 157
>U53332-7|AAM15582.1| 379|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform c protein.
Length = 379
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = -3
Query: 228 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 76
+A +S + +T++ + ++STSS++GA+ A A A + + + S +L +
Sbjct: 7 VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57
>U53332-6|AAL32225.1| 470|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform b protein.
Length = 470
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = -3
Query: 228 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 76
+A +S + +T++ + ++STSS++GA+ A A A + + + S +L +
Sbjct: 7 VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57
>DQ178634-1|ABD75713.1| 470|Caenorhabditis elegans ceramide
glycosyl transferase protein.
Length = 470
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = -3
Query: 228 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 76
+A +S + +T++ + ++STSS++GA+ A A A + + + S +L +
Sbjct: 7 VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57
>DQ178633-1|ABD75712.1| 470|Caenorhabditis elegans ceramide
glycosyl transferase protein.
Length = 470
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = -3
Query: 228 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 76
+A +S + +T++ + ++STSS++GA+ A A A + + + S +L +
Sbjct: 7 VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57
>AL032662-1|CAA21758.1| 238|Caenorhabditis elegans Hypothetical
protein Y75B12A.2 protein.
Length = 238
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 555 FTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPS-TPLV 677
F +SC +T ST ++ + K T ++TV+ PS TP++
Sbjct: 116 FNGKSCQEKTTSTTTTTSTKTEIQTTTTTVLISEVPSTTPII 157
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 268 DNLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVRSQRTHGEDEG 104
DN + + Q FR+ G S + + + ISSW +C + GEDEG
Sbjct: 795 DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTYKCISSWWRCDGQDDCGDGEDEG 849
>Z22180-4|CAA80178.1| 312|Caenorhabditis elegans Hypothetical
protein K11H3.3 protein.
Length = 312
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 260 EVIKEAVKRLIENGKRNTMDFAYQLWTKDG 349
+V+K ++ L +NT+D A Q+W K+G
Sbjct: 242 DVVKTRMQGLEAKKYKNTLDCAMQIWKKEG 271
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +2
Query: 389 VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 544
++ T++ +K++N +R H L L +KI F D D + + W +P LE
Sbjct: 911 IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970
Query: 545 NNRVYFKIMSTEDK 586
V FK+ +K
Sbjct: 971 AGTVLFKVSIFREK 984
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +2
Query: 389 VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 544
++ T++ +K++N +R H L L +KI F D D + + W +P LE
Sbjct: 911 IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970
Query: 545 NNRVYFKIMSTEDK 586
V FK+ +K
Sbjct: 971 AGTVLFKVSIFREK 984
>U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 9 protein.
Length = 703
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 176 EQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 355
E+ Y ++GE E + KC +K++ G ++++IE + + F +TK+ +
Sbjct: 440 EEKYQHEILGEMEGQVLKC---VKDQNG---NHVIQKVIERVEPERLQFIIDAFTKNNSD 493
Query: 356 IV--KSYFPIQFRVI 394
V S P RVI
Sbjct: 494 NVYTLSVHPYGCRVI 508
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 546 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLT-PST 668
TTE S + PP ++T + +T+ V ST IAP+T PST
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPST 432
>Z22173-2|CAA80126.1| 327|Caenorhabditis elegans Hypothetical
protein C15H7.4 protein.
Length = 327
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 140 ATLAPRTDDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGK 304
AT +P + L ++ +V G E +A + EKK EV+ + +EN K
Sbjct: 136 ATTSPTIESDLTDKPDTNVYTGSREGYVAPSEKGSNEKKKEVVPNGGDKSVENKK 190
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 27.9 bits (59), Expect = 9.7
Identities = 27/122 (22%), Positives = 49/122 (40%)
Frame = +1
Query: 421 KQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDHVHRGQTVPEA 600
K+ P+ + +P P Q +Q+QN ++ Q + Q H H G
Sbjct: 1114 KKAAPATIGMPQPPPPSQ-----IQQQNMPMQHQQMQQHPNAQMMMQQQHQHPGAG-GHL 1167
Query: 601 R*HERFX**PYHLR**HR*HLQHHWYLEPLHVRKXRHVXRLQPRVQPVL*HLNERYGPPT 780
+ H + + H QHH + +H ++ + + + Q Q L HL ++ PP+
Sbjct: 1168 QLHPQMH---MQMLPQHHQQQQHHEEMMMMHHQQQQQLQQQQQMHQMPLHHLPQQPPPPS 1224
Query: 781 NN 786
N
Sbjct: 1225 QN 1226
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +2
Query: 200 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPI 379
IG+ + A S+ LK +GE+ K A K +IE + W KDGKEI KS F
Sbjct: 3825 IGQSKQAPPTISQQLKPLQGELGK-AAKFVIEFAGAAPVKVT---WLKDGKEI-KSTFRT 3879
Query: 380 QFRVIFTEQTVKLINKRDHHA 442
T ++ + + HA
Sbjct: 3880 LITTTPTNSSLHIGRLENSHA 3900
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +2
Query: 200 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPI 379
IG+ + A S+ LK +GE+ K A K +IE + W KDGKEI KS F
Sbjct: 3778 IGQSKQAPPTISQQLKPLQGELGK-AAKFVIEFAGAAPVKVT---WLKDGKEI-KSTFRT 3832
Query: 380 QFRVIFTEQTVKLINKRDHHA 442
T ++ + + HA
Sbjct: 3833 LITTTPTNSSLHIGRLENSHA 3853
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +2
Query: 200 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPI 379
IG+ + A S+ LK +GE+ K A K +IE + W KDGKEI KS F
Sbjct: 4063 IGQSKQAPPTISQQLKPLQGELGK-AAKFVIEFAGAAPVKVT---WLKDGKEI-KSTFRT 4117
Query: 380 QFRVIFTEQTVKLINKRDHHA 442
T ++ + + HA
Sbjct: 4118 LITTTPTNSSLHIGRLENSHA 4138
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +2
Query: 200 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPI 379
IG+ + A S+ LK +GE+ K A K +IE + W KDGKEI KS F
Sbjct: 4063 IGQSKQAPPTISQQLKPLQGELGK-AAKFVIEFAGAAPVKVT---WLKDGKEI-KSTFRT 4117
Query: 380 QFRVIFTEQTVKLINKRDHHA 442
T ++ + + HA
Sbjct: 4118 LITTTPTNSSLHIGRLENSHA 4138
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +2
Query: 200 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPI 379
IG+ + A S+ LK +GE+ K A K +IE + W KDGKEI KS F
Sbjct: 4022 IGQSKQAPPTISQQLKPLQGELGK-AAKFVIEFAGAAPVKVT---WLKDGKEI-KSTFRT 4076
Query: 380 QFRVIFTEQTVKLINKRDHHA 442
T ++ + + HA
Sbjct: 4077 LITTTPTNSSLHIGRLENSHA 4097
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +2
Query: 200 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPI 379
IG+ + A S+ LK +GE+ K A K +IE + W KDGKEI KS F
Sbjct: 3794 IGQSKQAPPTISQQLKPLQGELGK-AAKFVIEFAGAAPVKVT---WLKDGKEI-KSTFRT 3848
Query: 380 QFRVIFTEQTVKLINKRDHHA 442
T ++ + + HA
Sbjct: 3849 LITTTPTNSSLHIGRLENSHA 3869
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,838
Number of Sequences: 27780
Number of extensions: 403438
Number of successful extensions: 1524
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -