Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B02
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.61 
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    31   0.81 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    31   0.81 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   1.4  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    28   7.5  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    28   7.5  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 165  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 269
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 150  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 320
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 321  GRQHCVTVDCCCHGS 365
            GR HC +  C C  S
Sbjct: 1250 GR-HC-SQSCRCANS 1262



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 147  KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 326
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC    L  +SG 
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194

Query: 327  QHC 335
            +HC
Sbjct: 1195 EHC 1197


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 150  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 320
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 321  GRQHCVTVDCCCHGS 365
            GR HC +  C C  S
Sbjct: 1250 GR-HC-SQSCRCANS 1262



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 147  KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 326
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC    L  +SG 
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194

Query: 327  QHC 335
            +HC
Sbjct: 1195 EHC 1197


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -2

Query: 363  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 211
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 864 PXXAKPGFXPGGGWADXXXAXGKPXPKXSPXEPG 763
           P     G  PGGGWAD     G+  P     + G
Sbjct: 272 PVAGAAGGAPGGGWADMLANIGQRPPSPQDAQQG 305


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 864 PXXAKPGFXPGGGWADXXXAXGKPXPKXSPXEPG 763
           P     G  PGGGWAD     G+  P     + G
Sbjct: 272 PVAGAAGGAPGGGWADMLANIGQRPPSPQDAQQG 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,011
Number of Sequences: 27780
Number of extensions: 279140
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)