Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B01
         (913 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   7.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   7.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 817 PPPXPXPXAXPXRPAPXPPPPXXPP 891
           PPP P   A P   +    P   PP
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPP 35


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 513 PNXPXXPPPPXPPTXP 560
           P  P  PP P PP  P
Sbjct: 175 PPLPQVPPLPLPPIFP 190



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
 Frame = +1

Query: 778 PPPXXXHXTPHXPPPPXPXPXAXPX-RPAPXPPPPXXPPTPPXP 906
           P P      P  PP         P  +  P P PP  PPT   P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 569 PPPPXPPXPXPPGXXXPPAHKTPT 640
           P P  PP P PP    PP    P+
Sbjct: 176 PLPQVPPLPLPP--IFPPTMINPS 197


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 533 PPXXXPHXPXTTPPPP 580
           PP      P T PPPP
Sbjct: 202 PPTEDCDVPSTIPPPP 217


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/42 (30%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
 Frame = +1

Query: 796 HXTPHXP---PPPXPXPXAXPXRPAPXPPPPXXPPTPPXPPP 912
           H  P  P   PP    P      P         P TPP P P
Sbjct: 62  HKAPIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSP 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.142    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,564
Number of Sequences: 336
Number of extensions: 3147
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25444518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)