Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B01
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.14 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.55 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 817 PPPXPXPXAXPXRPAPXPPPPXXPPTPPXPPP 912
           P P P P   P  P    PP      PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 27.5 bits (58), Expect = 0.18
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 530 PPPXXXPHXPXTTPPPPXPPXPXPPGXXXPPAHKTPTQ 643
           P P   P  P    PP     P P G    P  + P+Q
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62



 Score = 26.6 bits (56), Expect = 0.31
 Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
 Frame = +1

Query: 805 PHXPPPPXPXPXAX----PXRPAPXPPPPXXPPTPPXPPP 912
           P   P P   P A     P  P+  PPP   P  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 0.96
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +2

Query: 530 PPPXXXPHXPXTTP---PPPXPPXPXPPGXXXPPAHKTPTQPPA 652
           P P   PH     P    PP P    PPG   PP    P+Q P+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPG--GPPG-APPSQNPS 61



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +1

Query: 778 PPPXXXHXTPHXPPPPXPXPXAXPXRPAPXPPPPXXP 888
           P P      P    PP P     P  P P  PP   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 513 PNXPXXPPPPXPPTXPXXHPP 575
           PN    PPP  PP  P    P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 566 TPPPPXPPXPXPPGXXXPPAHK 631
           TPP P PP P PP    P + K
Sbjct: 337 TPPKPAPP-PPPPSSSGPDSAK 357



 Score = 25.4 bits (53), Expect = 0.72
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 847 PXRPAPXPPPP 879
           P +PAP PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 858 GAXPPPPXXXPXPPPPPP 911
           G    PP   P PPPPPP
Sbjct: 333 GDSDTPPK--PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 856 PAPXPPPPXXPPTPPXP 906
           P P PPPP  PP+   P
Sbjct: 339 PKPAPPPP--PPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 873  PPXXXPXPPPPPP 911
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 888  PXPPPPPP 911
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 655  QKPPPXXPPP 684
            Q+PPP  PPP
Sbjct: 1353 QQPPPPPPPP 1362


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/44 (27%), Positives = 12/44 (27%)
 Frame = +1

Query: 778 PPPXXXHXTPHXPPPPXPXPXAXPXRPAPXPPPPXXPPTPPXPP 909
           P P   H      P   P        P P PP P     P   P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.142    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,297
Number of Sequences: 438
Number of extensions: 8430
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)