Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_A23
(882 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 31 1.4
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81069-8|CAB02996.2| 600|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL021448-4|CAA16278.2| 600|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 29 5.8
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 29 5.8
Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical p... 28 7.7
Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF101307-3|AAC69212.2| 315|Caenorhabditis elegans Hypothetical ... 28 7.7
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 877 EERIRFSPTTVPWKAPVFTQSSTRTVSVSGNSNN 776
++ + SPTTV PVFT SST ++S SG +++
Sbjct: 238 DDGLTSSPTTVA--GPVFTTSSTSSISTSGEASS 269
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 877 EERIRFSPTTVPWKAPVFTQSSTRTVSVSGNSNN 776
++ + SPTTV PVFT SST ++S SG +++
Sbjct: 116 DDGLTSSPTTVA--GPVFTTSSTSSISTSGEASS 147
>Z81069-8|CAB02996.2| 600|Caenorhabditis elegans Hypothetical
protein Y2H9A.4 protein.
Length = 600
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 651 YGIIKENEQFVMYANYSNFPGLTPNNEDRI 740
+G + EN Q+ MY Y +T ++DRI
Sbjct: 484 FGEVLENAQYAMYEAYKKLAQITETHDDRI 513
>AL021448-4|CAA16278.2| 600|Caenorhabditis elegans Hypothetical
protein Y2H9A.4 protein.
Length = 600
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 651 YGIIKENEQFVMYANYSNFPGLTPNNEDRI 740
+G + EN Q+ MY Y +T ++DRI
Sbjct: 484 FGEVLENAQYAMYEAYKKLAQITETHDDRI 513
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 539 TCSIRSLSSIFCXHGSXKXNGL-R*DDGW 622
TCS+ S C HG NGL + +DGW
Sbjct: 853 TCSVTSCIDSQCTHGHCGTNGLCKCEDGW 881
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 28.7 bits (61), Expect = 5.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 720 PNNEDRIAYLTERCWPK 770
PNNE+ + Y ++CWP+
Sbjct: 1112 PNNENIVGYNNKKCWPR 1128
>Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical
protein K04C1.6 protein.
Length = 332
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 281 VAVLAGLDVEVLGDFVVLSFIVDLV----NVVEKRQNLLLLFDERSVNRCC 141
+ + GL + +LS+IV L+ + + Q LLLLF ++V RCC
Sbjct: 248 IIIACGLSFKSESTDEILSWIVILIPFASDALTLTQPLLLLFFSKTVRRCC 298
>Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -2
Query: 425 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 288
+I+G RDG F HF V K +E +Q LG ++ V H E+F V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471
>Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -2
Query: 425 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 288
+I+G RDG F HF V K +E +Q LG ++ V H E+F V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471
>Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical
protein K04C1.6 protein.
Length = 332
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 281 VAVLAGLDVEVLGDFVVLSFIVDLV----NVVEKRQNLLLLFDERSVNRCC 141
+ + GL + +LS+IV L+ + + Q LLLLF ++V RCC
Sbjct: 248 IIIACGLSFKSESTDEILSWIVILIPFASDALTLTQPLLLLFFSKTVRRCC 298
>AF101307-3|AAC69212.2| 315|Caenorhabditis elegans Hypothetical
protein F41H8.2 protein.
Length = 315
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -3
Query: 850 TVPWKAPVFTQSSTRTVSVSGNSNNKHLGQHLSVK*AILSSLLGVS 713
T+ WK V +++ + S +G+++NK+ + + ++SSLL ++
Sbjct: 197 TIFWKLKVVSKNKSSVASAAGSTSNKYAKANRTSTGILMSSLLFIT 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,851,411
Number of Sequences: 27780
Number of extensions: 381024
Number of successful extensions: 1094
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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