Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A23
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21820.1 68417.m03156 calmodulin-binding family protein conta...    30   2.4  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    29   3.1  
At4g17620.1 68417.m02636 glycine-rich protein                          29   3.1  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    29   3.1  
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   7.2  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    28   7.2  
At5g48750.1 68418.m06033 auxin-responsive protein, putative simi...    28   9.5  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    28   9.5  

>At4g21820.1 68417.m03156 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 1088

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 212 LVNVVEKRQNLLLLFDERSVNRCCFEFRYGATESEGNKP 96
           L NV+ KR  LL+L  +R+ ++ C   +YG    +G  P
Sbjct: 337 LGNVILKRILLLVLVIDRAKSQSCLSLKYGIDGIDGGSP 375


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 720  PNNEDRIAYLTERCWPK 770
            PNNE+ + Y  ++CWP+
Sbjct: 1118 PNNENMVGYNNKKCWPR 1134


>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 630 DEKICYNYGIIKENEQFVM 686
           DE +C+ YG +KENE +++
Sbjct: 487 DEVLCWLYGTVKENEDYIL 505


>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 720  PNNEDRIAYLTERCWPK 770
            PNNE+ + Y  ++CWP+
Sbjct: 1166 PNNENMVGYNNKKCWPR 1182


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 258 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIF---YEKMR--EEAIALFK 401
           I  +K C    KA E F  MYK G +P  + +S     Y K    EE ++L++
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 443 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 327
           C+ E F++F  I + E+R GF      K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174


>At5g48750.1 68418.m06033 auxin-responsive protein, putative similar
           to auxin-induced protein AIR12  GI:11357190 [Arabidopsis
           thaliana];
          Length = 255

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 835 APVFTQSSTRTVSVSGNSNNKHLGQH 758
           AP FT+++T  V VS +S+N + G+H
Sbjct: 19  APCFTRATTNEVQVSCDSHNFNNGKH 44


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +3

Query: 120 STVPEFKTTPVDAAFVEKQKKILSLFYNVNEINYEAEYYKVAQDFNIEASKDC--YTNMK 293
           STVP F ++  DA     +   +SL     +  ++   Y   QD   E         +  
Sbjct: 652 STVPRFASSSGDA-----EASPMSL----TDSGFQNSLYSCMQDTTHELLHGAGQINSSN 702

Query: 294 AYENFMMMYKVGFLPKNLEFSIF--YEKMREEAIALFKL 404
             +NF+ +YK G + ++L+ S F  Y ++REE   +F +
Sbjct: 703 QTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAI 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,687
Number of Sequences: 28952
Number of extensions: 350159
Number of successful extensions: 994
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)