Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A20
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0619 - 4961588-4962409                                           51   1e-06
10_08_0215 - 15939842-15940056,15940235-15940913                       29   5.1  
09_01_0032 - 541411-541737,542751-543752                               29   5.1  
05_07_0219 - 28474661-28475146,28475979-28476644                       29   5.1  
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570...    29   5.1  
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315...    29   6.7  
07_01_0440 + 3338939-3339010,3339233-3339323,3339466-3339509,333...    28   8.9  

>11_01_0619 - 4961588-4962409
          Length = 273

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 24/55 (43%), Positives = 34/55 (61%)
 Frame = +3

Query: 276 RCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSCKIPQQEK 440
           +CQKC + GHW+YECK +R  + RPSRT+ + KN K K+     +   + P  EK
Sbjct: 95  QCQKCFQPGHWTYECKNERVYISRPSRTQQL-KNPKLKKTAAPVSYQFQNPDLEK 148


>10_08_0215 - 15939842-15940056,15940235-15940913
          Length = 297

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -3

Query: 816 GXLGGNXGXNXKFWGKX*GFGXGI*GSLXQGPXXG 712
           G  GG    N   WG   GFG G   S+  GP  G
Sbjct: 82  GGGGGGGSSNGNGWGSGSGFGSGYGESVASGPSSG 116


>09_01_0032 - 541411-541737,542751-543752
          Length = 442

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 276 RCQKCLEFGHWSYECKGKRK 335
           RC+ CL++GH + +CK  ++
Sbjct: 403 RCEDCLQYGHRTRDCKNNKE 422


>05_07_0219 - 28474661-28475146,28475979-28476644
          Length = 383

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 273 IRCQKCLEFGHWSYECKGKRKI 338
           I C++C +FGH++ EC   RK+
Sbjct: 343 IECRRCGKFGHFADECDEPRKM 364


>03_02_0114 +
           5704002-5704037,5704547-5704666,5705040-5705076,
           5705905-5705981,5706642-5706755,5706902-5706969,
           5707051-5707129,5707367-5707511,5707627-5707731,
           5707917-5707994,5708192-5708247,5708533-5708651,
           5708853-5709096,5709203-5709385,5709956-5710264,
           5710350-5710399,5711042-5711102,5711184-5711267,
           5711461-5711577,5711665-5711831,5711938-5712010,
           5712497-5712581,5712693-5712886,5713073-5713228
          Length = 918

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -1

Query: 224 LMPVICSQSHIQNLKGKINKIRG*LNICLEL----YCSNCNRSSIKIYRIKSANTSRGCG 57
           L  V  +++ I NLK K++ +RG LN  +++     C +CN+  +   ++     +    
Sbjct: 699 LEEVATAEADILNLKQKVSDLRGQLNNNVQMSSTSLCDSCNKRLLSTDKLFEDEQNTSPS 758

Query: 56  NASPTNL 36
           N  P ++
Sbjct: 759 NVGPNSM 765


>01_01_0419 -
           3146851-3147339,3148428-3148663,3148847-3149793,
           3150258-3150356,3151128-3151501
          Length = 714

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 273 IRCQKCLEFGHWSYECKGKRKI 338
           I C +C +FGH++ EC   RK+
Sbjct: 674 IECHRCGKFGHFADECDEPRKM 695


>07_01_0440 +
           3338939-3339010,3339233-3339323,3339466-3339509,
           3339747-3340382,3340511-3340570
          Length = 300

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 113 RSSIKIYRIKSANTSRGCGNASPTNL 36
           + S K+ RI+ A++  GC   +PTNL
Sbjct: 6   KMSAKVKRIRFADSQTGCEGTTPTNL 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,268,800
Number of Sequences: 37544
Number of extensions: 316765
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)