Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A20
         (905 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.42 
SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)                 32   0.73 
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   3.0  
SB_22256| Best HMM Match : zf-CCHC (HMM E-Value=0.0025)                29   3.9  
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)                28   9.0  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      28   9.0  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 707 PXPXNGPWXKLP*IPXPK-PYXXPQNFXFXP*FPPNXPXP 823
           P P N P+   P  P P  PY  P N  + P  PPN P P
Sbjct: 167 PPPPNAPYPPPPYPPPPNPPYPPPPNPPYPP--PPNAPNP 204



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/60 (35%), Positives = 22/60 (36%)
 Frame = +2

Query: 644 PXLKXKXCXYSXPNXFFET*XPXPXNGPWXKLP*IPXPKPYXXPQNFXFXP*FPPNXPXP 823
           P L    C    P  F     P P   P    P  P P PY  P N  + P  PPN P P
Sbjct: 73  PCLVSAKCGGHPPTNF----SPNPPYPP-PPYPPYPPPPPYPPPPNPPYPP--PPNAPYP 125



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 707 PXPXNGPWXKLP*IPXPKPYXXPQNFXFXP*FPPNXPXP 823
           P P N P+   P  P P P   P      P  PPN P P
Sbjct: 133 PPPPNAPYPPSPNAPYPPPPNPPYPPPLYP-PPPNPPPP 170


>SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)
          Length = 348

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 288 CLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSCKIPQQ 434
           CL+ GH   EC+ K+K  + PS     H  L A      +N    IP Q
Sbjct: 20  CLKRGHPQRECRSKKKCEIVPSCPYFHHPLLHAHSPPASANAVTPIPPQ 68


>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 261 FPQGIRCQKCLEFGHWSYEC 320
           +P   RC +C E GH SYEC
Sbjct: 101 YPDKSRCYECGEGGHLSYEC 120


>SB_22256| Best HMM Match : zf-CCHC (HMM E-Value=0.0025)
          Length = 238

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 279 CQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKA 386
           C  CL+ GH   EC+ K+K  + PS     H  L A
Sbjct: 19  CFSCLKRGHPQRECRSKKKCEIVPSCPYFPHPLLHA 54


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 276 RCQKCLEFGHWSYECKGK 329
           RC +CL   H SYECK K
Sbjct: 357 RCFRCLRKNHRSYECKSK 374


>SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)
          Length = 558

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 267 QGIRCQKCLEFGHWSYECKGKR 332
           +G +C KC + GH++  CKG++
Sbjct: 41  RGKKCAKCFKSGHFAACCKGEK 62


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +3

Query: 279 CQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSCKIPQQEK 440
           C KC            +R  L+  S++  +H+N+ A++EG      C +   E+
Sbjct: 188 CDKCQIEQPEDKRDSDQRSDLIHSSQSEAVHRNVHAEDEGHIDEYGCGLHDNEQ 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,551,171
Number of Sequences: 59808
Number of extensions: 359807
Number of successful extensions: 1025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)