Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A20
         (905 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022443-1|AAH22443.1|  192|Homo sapiens ZCCHC10 protein protein.      71   8e-12
BC005211-1|AAH05211.1|  170|Homo sapiens zinc finger, CCHC domai...    71   8e-12
AK000101-1|BAA90946.1|  170|Homo sapiens protein ( Homo sapiens ...    71   8e-12
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    31   4.3  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    31   4.3  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    31   4.3  
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein...    31   4.3  

>BC022443-1|AAH22443.1|  192|Homo sapiens ZCCHC10 protein protein.
          Length = 192

 Score = 70.5 bits (165), Expect = 8e-12
 Identities = 30/42 (71%), Positives = 33/42 (78%)
 Frame = +3

Query: 267 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKE 392
           Q +RCQKCLEFGHW+YEC GKRK L RPSRT  + K LK KE
Sbjct: 41  QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKE 82


>BC005211-1|AAH05211.1|  170|Homo sapiens zinc finger, CCHC domain
           containing 10 protein.
          Length = 170

 Score = 70.5 bits (165), Expect = 8e-12
 Identities = 30/42 (71%), Positives = 33/42 (78%)
 Frame = +3

Query: 267 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKE 392
           Q +RCQKCLEFGHW+YEC GKRK L RPSRT  + K LK KE
Sbjct: 19  QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKE 60


>AK000101-1|BAA90946.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20094 fis, clone COL04320. ).
          Length = 170

 Score = 70.5 bits (165), Expect = 8e-12
 Identities = 30/42 (71%), Positives = 33/42 (78%)
 Frame = +3

Query: 267 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKE 392
           Q +RCQKCLEFGHW+YEC GKRK L RPSRT  + K LK KE
Sbjct: 19  QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKE 60


>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 300  GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 419
            GH +  C+G R IL      R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 300  GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 419
            GH +  C+G R IL      R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 300  GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 419
            GH +  C+G R IL      R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537


>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
           lipoprotein-related protein 1 variant protein.
          Length = 2359

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 300 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 419
           GH +  C+G R IL      R ++ + +A++E +C+NG C
Sbjct: 315 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 353


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,070,503
Number of Sequences: 237096
Number of extensions: 1802724
Number of successful extensions: 3058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3058
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)