Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A20
         (905 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071154-1|AAL48776.1|  176|Drosophila melanogaster RE18415p pro...    75   1e-13
AE014297-2125|AAF55257.1|  176|Drosophila melanogaster CG5516-PA...    75   1e-13
M14954-1|AAA70221.1|  426|Drosophila melanogaster putative ORF1 ...    33   0.41 
AE014296-862|AAF47912.1|  707|Drosophila melanogaster CG13722-PA...    32   1.2  
X17551-1|CAA35586.1|  565|Drosophila melanogaster ORF1 for putat...    29   8.8  
BT014916-1|AAT47767.1|  409|Drosophila melanogaster RE14563p pro...    29   8.8  
AJ278684-1|CAB99191.1|  488|Drosophila melanogaster gag-like pro...    29   8.8  

>AY071154-1|AAL48776.1|  176|Drosophila melanogaster RE18415p
           protein.
          Length = 176

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +3

Query: 195 MTL-GTYNRHQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMH 371
           MTL G   R  A++K+       FP GIRCQKCL+ GHWSYECK KRK + R SRT+ + 
Sbjct: 1   MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRKYVHRSSRTKQLS 60

Query: 372 KNLKAKE 392
           K +  KE
Sbjct: 61  KRMSQKE 67


>AE014297-2125|AAF55257.1|  176|Drosophila melanogaster CG5516-PA
           protein.
          Length = 176

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +3

Query: 195 MTL-GTYNRHQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMH 371
           MTL G   R  A++K+       FP GIRCQKCL+ GHWSYECK KRK + R SRT+ + 
Sbjct: 1   MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRKYVHRSSRTKQLS 60

Query: 372 KNLKAKE 392
           K +  KE
Sbjct: 61  KRMSQKE 67


>M14954-1|AAA70221.1|  426|Drosophila melanogaster putative ORF1
           protein.
          Length = 426

 Score = 33.5 bits (73), Expect = 0.41
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 264 PQGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSN 410
           P  +RC+KCL FGH +  CK   +  +  S T+  +   K   E  C N
Sbjct: 183 PLPLRCKKCLRFGHPTPICKSV-ETCINCSETKHTNDGEKCTNEKNCLN 230


>AE014296-862|AAF47912.1|  707|Drosophila melanogaster CG13722-PA
           protein.
          Length = 707

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 707 PXPXNGPWXKLP*IPXPKPYXXPQNFXFXP*FPPNXPXPKF 829
           P P +G     P IP P P   PQ +   P  P + P PK+
Sbjct: 477 PQPKSGYDYPKPAIPFPAPTNPPQKYLPPPVIPTSPPVPKY 517



 Score = 29.1 bits (62), Expect = 8.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 707 PXPXNGPWXKLP*IPXPKPYXXPQNFXFXP*FPPNXPXPKF 829
           P P +G     P IP P P   PQ +   P  P + P PK+
Sbjct: 420 PQPKSGYDYPKPAIPFPPPTNPPQKY-LPPVVPTSPPQPKY 459


>X17551-1|CAA35586.1|  565|Drosophila melanogaster ORF1 for putative
           RNA bindingprotein protein.
          Length = 565

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 273 IRCQKCLEFGHWSYECKGKRKILV--RPSRTRIMHKNLKAKEEGQCSN 410
           ++C  C E+GH    C  K   +V   P  T    KN   K   +CSN
Sbjct: 382 VQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSN 429


>BT014916-1|AAT47767.1|  409|Drosophila melanogaster RE14563p
           protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 273 IRCQKCLEFGHWSYECKGKRKILV--RPSRTRIMHKNLKAKEEGQCSN 410
           ++C  C E+GH    C  K   +V   P  T    KN   K   +CSN
Sbjct: 226 VQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSN 273


>AJ278684-1|CAB99191.1|  488|Drosophila melanogaster gag-like
           protein protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 273 IRCQKCLEFGHWSYECK 323
           IRC +CLEFGH +  CK
Sbjct: 407 IRCFRCLEFGHRAPYCK 423


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,430,108
Number of Sequences: 53049
Number of extensions: 542463
Number of successful extensions: 1246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)