Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A20
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    51   9e-07
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    29   3.2  
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    29   3.2  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    29   3.2  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   7.4  

>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = +3

Query: 276 RCQKCLEFGHWSYECKGKRKILVRPSRT-RIMHKNLKAKEEGQCSNGSCKIPQQEK 440
           +CQKC + GHW+YECK +R  + RPSRT ++ +  L+ K      +GS    ++E+
Sbjct: 99  QCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGSDDDDEEER 154


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 203 QSHIQNLKGKINKIRG*LNICLELYCSNCNRSSIKIYRIKSANTSRGC 60
           ++H+ N +GK +K       C E YC  C    +K Y I      R C
Sbjct: 387 ENHVSNSRGKFHKS------CYERYCYVCKEKKMKTYNIHPFWEERYC 428


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +2

Query: 725 PWXKLP*IPXPKPYXXPQNFXFXP*FPP----NXPXPKF 829
           P   +P  P   PY  P +F + P FPP    N P P F
Sbjct: 31  PICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGF 69


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +2

Query: 725 PWXKLP*IPXPKPYXXPQNFXFXP*FPP----NXPXPKF 829
           P   +P  P   PY  P +F + P FPP    N P P F
Sbjct: 31  PICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGF 69


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 279 CQKCLEFGHWSYECKGK 329
           C KC + GHWS +C G+
Sbjct: 306 CYKCGKQGHWSRDCTGQ 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,897
Number of Sequences: 28952
Number of extensions: 259477
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)