Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A19
         (1042 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.72 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.72 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   5.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   8.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   8.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 56  PPPPPPXNXPPXTXRGPRP 112
           PPPP P + PP    G  P
Sbjct: 736 PPPPHPHHQPPRNPVGTNP 754



 Score = 25.0 bits (52), Expect = 0.96
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 28  PPPPPPXXXPPXTPPXEXP 84
           PPPP P   PP  P    P
Sbjct: 736 PPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 56  PPPPPPXNXPPXTXRGPRP 112
           PPPP P + PP    G  P
Sbjct: 628 PPPPHPHHQPPRNPVGTNP 646



 Score = 25.0 bits (52), Expect = 0.96
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 28  PPPPPPXXXPPXTPPXEXP 84
           PPPP P   PP  P    P
Sbjct: 628 PPPPHPHHQPPRNPVGTNP 646


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 23  PPPPPXPXXPXPPPPPPXNXPP 88
           PP P  P  P PP  PP    P
Sbjct: 175 PPLPQVPPLPLPPIFPPTMINP 196


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 10  PXXPPXPPPPPPXXXPP 60
           P  PP P PPP     P
Sbjct: 95  PTTPPTPSPPPEERLTP 111


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 72  GGGGGGXGXXGXGGG 28
           G GGG  G  G GGG
Sbjct: 94  GRGGGRDGDRGDGGG 108



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 72  GGGGGGXGXXGXGGGGG 22
           GGG GG      G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 29  PPPXPXXPXPPPPPPXNXP 85
           P P P  P  P P P   P
Sbjct: 80  PEPDPEIPVAPEPAPLASP 98


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 29  PPPXPXXPXPPP 64
           P P P  P PPP
Sbjct: 205 PEPVPSTPYPPP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.309    0.147    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,478
Number of Sequences: 336
Number of extensions: 2586
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29691936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)