Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A18
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        29   1.1  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    27   2.6  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   4.6  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 766 ANDLHRTEIPTRGEL*ERGHAFXKGERRTGIR 671
           A +L RT IPT   +  R H F  GE+  GI+
Sbjct: 397 AEELLRTTIPTMLPIPRRQHRFINGEKGVGIQ 428


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 654 PTLPAYRIPVR--LSPFXKAWPLSHSSPLVGISVRCRSFAPSWG 779
           PTLP Y +PVR  +S      P S   P + I+ R +     +G
Sbjct: 19  PTLPLYNVPVRRSISSSSSIPPSSSPPPRLTITQRVKELTKKYG 62


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 546 EHHKNRRSSQRWRNPTGL*RYQAF----PPG-SXPXALSLVPTLPAYRI 677
           ++HKNR+S+     P GL  Y+A     PPG     A  LV  L  Y +
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGYDV 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,598
Number of Sequences: 5004
Number of extensions: 63355
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)