Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A17
         (954 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 850 GXXXGGGGGGXGGGXXGGGGXXG 782
           G      GGG GGG  G  G  G
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDGG 107



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 953 GGGXGGGGXGGXXXGG 906
           GGG GGG  G    GG
Sbjct: 92  GGGRGGGRDGDRGDGG 107



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 838 GGGGGGXGGGXXGGGG 791
           GG GGG  G    GGG
Sbjct: 93  GGRGGGRDGDRGDGGG 108


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = +1

Query: 874  PXPXXXXPXXXPPXXXPPXPPPPXPPP 954
            P      P   P    PP PP    PP
Sbjct: 1360 PGSTTNYPEWQPTEWHPPIPPTSEKPP 1386


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 922 PPXPPPPXPPP 954
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,786
Number of Sequences: 336
Number of extensions: 3181
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26892580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)