Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A17
         (954 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.58 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 810 PPPXPPPPPP 839
           P P PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 25.4 bits (53), Expect = 0.76
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 922 PPXPPPPXPPP 954
           PP P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 810 PPPXPPPPPPXXXPXP 857
           PP   PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 907 PPXXXPPXPPPPXPPP 954
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/29 (37%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
 Frame = +3

Query: 813 PPXPPP-PPPXXXPXPPPXXXPPPXXXXP 896
           PP P   PPP   P  PP   P      P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 810 PPPXPPPPPPXXXPXPPPXXXPPP 881
           P P   P  P     P P   PPP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 416 PXPPXXPXPPPXXXGRGSPLH*GXXXPPXMXP 511
           P P   P   P    RGSP +     PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 895 PXXXPPXXXPPXPPPPXPP 951
           P   PP   PP  PP   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -3

Query: 877 GGXXXGGGXGXXXGGGGGGXGGGXXGGGGXXG 782
           GG       G   G  GG    G   GGG  G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 880 GGGXXXGGGXGXXXGGGGGGXGGGXXGGGGXXG 782
           G G    GG      GG    G    GGGG  G
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = -3

Query: 895 GXXXXGGGXXXGGGXGXXXGGGGGGXGGG 809
           G    GG      G     G   GG GGG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 810  PPPXPPPP 833
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 813  PPXPPPPP 836
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 816  PXPPPPPP 839
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 931  PPPPXPPP 954
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 390  AWYXNYXPPPXPP 428
            AW     PPP PP
Sbjct: 1349 AWRQQQPPPPPPP 1361


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 816  PXPPPPPP 839
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,014
Number of Sequences: 438
Number of extensions: 6648
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)