Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A16
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.16 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.66 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.66 
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.66 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.87 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.87 
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   8.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 755 PXLXPPXXPPXPPRPXAXXPPPPPXXKKTKXXXGPXPQXP 874
           P   P   P  PP P    PPPPP          P P  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +2

Query: 755 PXLXPPXXPPXPPRPXAXXPPPPPXXKKTKXXXGPXPQXP 874
           P   P   PP  P      PPPPP          P P  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
 Frame = +2

Query: 755 PXLXPPXXPPXPPR-----PXAXXPPPPPXXKKTKXXXGPXPQ 868
           P +  P  PP PP      P    PPPP           P PQ
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +2

Query: 767 PPXXPPXPPRPXAXXPP--PPP 826
           PP  PP PP P    PP  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPP 26



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 755 PXLXPPXXPPXPPRPXAXXPPPPP 826
           P   PP  PP    P +  PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 767 PPXXPPXPPRPXAXXPPPPPXXKKTKXXXGP 859
           PP  PP    P    PPPPP   K +    P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +2

Query: 755  PXLXPPXXPPXPPRPXAXXPPPPPXXKKTKXXXGPXPQXP 874
            P + PP   P  P P A  PP P    K      P  + P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 755  PXLXPPXXPPXPPRPXAXXPPPPP 826
            P + PP   P  P+P    PP PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPP 1212


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 225 LTSAQNSSTIAPVT--EPTQELVNYEALKYIVGRPFQFELHSRRATG 359
           L  A N + +AP +  + T+E+  +    +  GR F F  HSR+ +G
Sbjct: 265 LLHASNQTFMAPASGLQSTEEIPQFSKTGHSRGRKFNFHHHSRKNSG 311


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +2

Query: 755  PXLXPPXXPPX--PPRPXAXXPPPPPXXKKTKXXXGPXPQXP 874
            P   PP  P    PP+  A  PPPPP          P P  P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 767  PPXXPPXPPRPXAXXPPPPP 826
            PP  PP P  P +  PPP P
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLP 1736



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/37 (29%), Positives = 13/37 (35%)
 Frame = +2

Query: 755  PXLXPPXXPPXPPRPXAXXPPPPPXXKKTKXXXGPXP 865
            P +  P  P  PP P      PPP    +     P P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 825 GGGGGXXAXGRGGXGGXXGG 766
           GGG G    GRGG GG  GG
Sbjct: 37  GGGRGGARGGRGGRGGARGG 56



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 822 GGGGXXAXGRGG-XGGXXGGXRXG 754
           GG G    GRGG  GG  GG R G
Sbjct: 23  GGRGGFGGGRGGARGGGRGGARGG 46


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 221 SSYECPKLVNDCSGHRAHPRTGQL 292
           S   C K  NDCSGH    + GQL
Sbjct: 292 SEEACSKATNDCSGHGRCSKYGQL 315


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 756 PFSXPPXXPLXPPXP 800
           PF  PP  PL PP P
Sbjct: 802 PFKAPPPAPLPPPAP 816


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 481 GGPXIWXGGPPXFWGXVPXLGGRP 410
           GGP  + GGP  F G +   GG P
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGP 258


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/37 (29%), Positives = 12/37 (32%)
 Frame = +2

Query: 755 PXLXPPXXPPXPPRPXAXXPPPPPXXKKTKXXXGPXP 865
           P + P    P P       PPPPP          P P
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,407
Number of Sequences: 5004
Number of extensions: 37594
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)