Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A16
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 227 YECPKLVNDCSGHRAHPRTGQL*GLEVHRWTPVSI 331
           +EC K  N C  HR   R      L + +W+ ++I
Sbjct: 98  FECSKTSNPCLPHRNSDR-----DLNIRKWSSIAI 127


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 537 PKRGXFPXPXNGPP 578
           P+RG  P P  GPP
Sbjct: 34  PQRGSPPNPSQGPP 47


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 266 RAHPRTGQL*GLEVHRWTPV 325
           R  P +  L  LEV RW P+
Sbjct: 112 RTEPLSPHLLNLEVERWRPL 131


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 480 GALEFGXGGPXXFGGWYRSLEXG 412
           G LEF    P  F GWY S E G
Sbjct: 286 GGLEF-TAAP--FNGWYMSTEIG 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,181
Number of Sequences: 438
Number of extensions: 4342
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)