Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_A15
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 81 2e-16
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 81 2e-16
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 29 1.1
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 6.0
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 7.9
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 81.0 bits (191), Expect = 2e-16
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +3
Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL +
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98
Score = 69.7 bits (163), Expect = 5e-13
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2
Query: 62 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 193
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 50.8 bits (116), Expect = 2e-07
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +1
Query: 280 LAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTE 456
++K ++ H + N V+ L K+AIV +DA PFR WYE+HY + +G KG K T
Sbjct: 72 VSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATS 130
Query: 457 AEEAIINKKRXQKTARXYLARQRLAKVXGALXEQFHTGAFAGLRGESP 600
+ + R + AR +KV AL QF G + P
Sbjct: 131 TP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRP 173
Score = 49.2 bits (112), Expect = 7e-07
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +2
Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLR 664
G L A V+S PGQ GR DGYIL+G EL FYLR
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLR 194
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 81.0 bits (191), Expect = 2e-16
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +3
Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL +
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98
Score = 69.7 bits (163), Expect = 5e-13
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2
Query: 62 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 193
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 50.0 bits (114), Expect = 4e-07
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +1
Query: 280 LAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTE 456
++K ++ H + N V+ L K+AIV +DA PFR WYE+HY + +G KG K T
Sbjct: 72 VSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATA 130
Query: 457 AEEAIINKKRXQKTARXYLARQRLAKVXGALXEQFHTGAFAGLRGESP 600
+ + R + AR +KV AL QF G + P
Sbjct: 131 TP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRP 173
Score = 49.2 bits (112), Expect = 7e-07
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +2
Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLR 664
G L A V+S PGQ GR DGYIL+G EL FYLR
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLR 194
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1
Query: 246 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPV 100
CPD + G Y V + ++R PS+++A ++ LF+R+ ++PP+
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = +1
Query: 283 AKPVSLMLCIMHLTMN-WCVQRPLFKNAIVVVD---ATPF---RQWYESHYTLP 423
AK S+ LC+ HL + + + PLF +I + D AT + W + Y P
Sbjct: 412 AKTSSIFLCLWHLVLTYYYLPDPLFLRSITLTDLESATSYFKDDSWMDDDYISP 465
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 50 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 166
+ TK G + RRA A RKK K + GRP +N
Sbjct: 3 ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,833
Number of Sequences: 5004
Number of extensions: 52433
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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